Regulog H16_A2655 - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/MocR
- By pathway - Metabolite transport
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 8 | 2 |
| Ralstonia eutropha H16 | 9 | 2 |
| Ralstonia eutropha JMP134 | 9 | 2 |
| Ralstonia metallidurans CH34 | 8 | 2 |
| Ralstonia pickettii 12J | 5 | 1 |
| Ralstonia solanacearum GMI1000 | 5 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| h16_A2656 |
*
Cupriavidus taiwanensis Site: position = -72 score = 15.4591 sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG Gene: RALTA_A2148: Riboflavin-specific deaminase |
*
Ralstonia eutropha H16 Site: position = -72 score = 15.4591 sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG Gene: H16_A2656: Riboflavin-specific deaminase |
*
Ralstonia eutropha JMP134 Site: position = -72 score = 15.1189 sequence = CAACTGTACTG-(13)-TAACTGTACCG-(0)-GTACTGTACCG Gene: Reut_A2344: Riboflavin-specific deaminase |
*
Ralstonia metallidurans CH34 Site: position = -72 score = 14.9657 sequence = CAACTGTACTG-(13)-CAACTGTATCG-(0)-GTACTGTACCG Gene: Rmet_2508: Riboflavin-specific deaminase |
|
|
Riboflavin-specific deaminase |
| h16_A2657 |
Gene: RALTA_A2149: Threonyl/alanyl tRNA synthetase, SAD |
Gene: H16_A2657: Threonyl/alanyl tRNA synthetase, SAD |
Gene: Reut_A2345: Threonyl/alanyl tRNA synthetase, SAD |
Gene: Rmet_2509: Threonyl/alanyl tRNA synthetase, SAD |
*
Ralstonia pickettii 12J Site: position = -105 score = 14.9693 sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG Gene: Rpic_0849: Threonyl/alanyl tRNA synthetase, SAD |
*
Ralstonia solanacearum GMI1000 Site: position = -101 score = 14.9693 sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG Gene: RS04304: Threonyl/alanyl tRNA synthetase, SAD |
Threonyl/alanyl tRNA synthetase, SAD |
| PF01810 |
Gene: RALTA_A2150: Transporter, LysE family |
Gene: H16_A2658: Transporter, LysE family |
Gene: Reut_A2346: Transporter, LysE family |
Gene: Rmet_2510: Transporter, LysE family |
|
|
Transporter, LysE family |
| PF00892 |
Gene: RALTA_A2151: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: H16_A2659: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Reut_A2347: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Rmet_2511: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: Rpic_0848: Permease of the drug/metabolite transporter (DMT) superfamily |
Gene: RS04305: Permease of the drug/metabolite transporter (DMT) superfamily |
Permease of the drug/metabolite transporter (DMT) superfamily |
| h16_A1735 |
Gene: RALTA_A2152: putative endoribonuclease; L-PSP family |
2
Ralstonia eutropha H16 Gene: H16_A2660: putative endoribonuclease; L-PSP family Gene: H16_A1735: putative endoribonuclease; L-PSP family |
Gene: Reut_A2348: putative endoribonuclease; L-PSP family |
Gene: Rmet_2512: putative endoribonuclease; L-PSP family |
Gene: Rpic_0847: putative endoribonuclease; L-PSP family |
Gene: RS04306: putative endoribonuclease; L-PSP family |
putative endoribonuclease; L-PSP family |
| h16_A2661 |
|
Gene: H16_A2661: hypothetical protein |
Gene: Reut_A2349: hypothetical protein |
|
Gene: Rpic_2105: hypothetical protein |
Gene: RS03532: hypothetical protein |
hypothetical protein |
| aspB |
Gene: RALTA_A2153: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: H16_A2662: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Reut_A2350: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Rmet_2513: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: Rpic_0846: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Gene: RS04307: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) |
| h16_A2663 |
Gene: RALTA_A2154: Glutathione S-transferase |
Gene: H16_A2663: Glutathione S-transferase |
Gene: Reut_A2351: Glutathione S-transferase |
Gene: Rmet_2514: Glutathione S-transferase |
Gene: Rpic_0845: Glutathione S-transferase |
Gene: RS04308: Glutathione S-transferase |
Glutathione S-transferase |
| CRON 2. | |||||||
| PF01810 |
*
Cupriavidus taiwanensis Site: position = -101 score = 13.8205 sequence = GACCTGTATCG-(13)-AAAGTGTACCG-(0)-GTACTGTACCG Gene: RALTA_A2694: Transporter, LysE family |
*
Ralstonia eutropha H16 Site: position = -91 score = 13.3421 sequence = GCGCCGTATCG-(13)-AAATTGTACCG-(0)-GTACTGTACCG Gene: H16_A3243: Transporter, LysE family |
*
Ralstonia eutropha JMP134 Site: position = -97 score = 12.9123 sequence = CTGCCGTCACG-(13)-AAACTGTACCG-(0)-GTACTGTACTG Gene: Reut_A2949: Transporter, LysE family |
*
Ralstonia metallidurans CH34 Site: position = -94 score = 10.9644 sequence = GGTCAGTACCG-(13)-AAAGTGTGCCG-(0)-GTACTGTATTG Gene: Rmet_3096: Transporter, LysE family |
|
|
Transporter, LysE family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |