Regulog H16_A2655 - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis	8	2
Ralstonia eutropha H16	9	2
Ralstonia eutropha JMP134	9	2
Ralstonia metallidurans CH34	8	2
Ralstonia pickettii 12J	5	1
Ralstonia solanacearum GMI1000	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
h16_A2656	* Cupriavidus taiwanensis Site: position = -72 score = 15.4591 sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG Gene: RALTA_A2148: Riboflavin-specific deaminase	* Ralstonia eutropha H16 Site: position = -72 score = 15.4591 sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG Gene: H16_A2656: Riboflavin-specific deaminase	* Ralstonia eutropha JMP134 Site: position = -72 score = 15.1189 sequence = CAACTGTACTG-(13)-TAACTGTACCG-(0)-GTACTGTACCG Gene: Reut_A2344: Riboflavin-specific deaminase	* Ralstonia metallidurans CH34 Site: position = -72 score = 14.9657 sequence = CAACTGTACTG-(13)-CAACTGTATCG-(0)-GTACTGTACCG Gene: Rmet_2508: Riboflavin-specific deaminase	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Riboflavin-specific deaminase
h16_A2657	Cupriavidus taiwanensis Gene: RALTA_A2149: Threonyl/alanyl tRNA synthetase, SAD	Ralstonia eutropha H16 Gene: H16_A2657: Threonyl/alanyl tRNA synthetase, SAD	Ralstonia eutropha JMP134 Gene: Reut_A2345: Threonyl/alanyl tRNA synthetase, SAD	Ralstonia metallidurans CH34 Gene: Rmet_2509: Threonyl/alanyl tRNA synthetase, SAD	* Ralstonia pickettii 12J Site: position = -105 score = 14.9693 sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG Gene: Rpic_0849: Threonyl/alanyl tRNA synthetase, SAD	* Ralstonia solanacearum GMI1000 Site: position = -101 score = 14.9693 sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG Gene: RS04304: Threonyl/alanyl tRNA synthetase, SAD	Threonyl/alanyl tRNA synthetase, SAD
PF01810	Cupriavidus taiwanensis Gene: RALTA_A2150: Transporter, LysE family	Ralstonia eutropha H16 Gene: H16_A2658: Transporter, LysE family	Ralstonia eutropha JMP134 Gene: Reut_A2346: Transporter, LysE family	Ralstonia metallidurans CH34 Gene: Rmet_2510: Transporter, LysE family	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Transporter, LysE family
PF00892	Cupriavidus taiwanensis Gene: RALTA_A2151: Permease of the drug/metabolite transporter (DMT) superfamily	Ralstonia eutropha H16 Gene: H16_A2659: Permease of the drug/metabolite transporter (DMT) superfamily	Ralstonia eutropha JMP134 Gene: Reut_A2347: Permease of the drug/metabolite transporter (DMT) superfamily	Ralstonia metallidurans CH34 Gene: Rmet_2511: Permease of the drug/metabolite transporter (DMT) superfamily	Ralstonia pickettii 12J Gene: Rpic_0848: Permease of the drug/metabolite transporter (DMT) superfamily	Ralstonia solanacearum GMI1000 Gene: RS04305: Permease of the drug/metabolite transporter (DMT) superfamily	Permease of the drug/metabolite transporter (DMT) superfamily
h16_A1735	Cupriavidus taiwanensis Gene: RALTA_A2152: putative endoribonuclease; L-PSP family	2 Ralstonia eutropha H16 Gene: H16_A2660: putative endoribonuclease; L-PSP family Gene: H16_A1735: putative endoribonuclease; L-PSP family	Ralstonia eutropha JMP134 Gene: Reut_A2348: putative endoribonuclease; L-PSP family	Ralstonia metallidurans CH34 Gene: Rmet_2512: putative endoribonuclease; L-PSP family	Ralstonia pickettii 12J Gene: Rpic_0847: putative endoribonuclease; L-PSP family	Ralstonia solanacearum GMI1000 Gene: RS04306: putative endoribonuclease; L-PSP family	putative endoribonuclease; L-PSP family
h16_A2661	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_A2661: hypothetical protein	Ralstonia eutropha JMP134 Gene: Reut_A2349: hypothetical protein	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_2105: hypothetical protein	Ralstonia solanacearum GMI1000 Gene: RS03532: hypothetical protein	hypothetical protein
aspB	Cupriavidus taiwanensis Gene: RALTA_A2153: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Ralstonia eutropha H16 Gene: H16_A2662: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Ralstonia eutropha JMP134 Gene: Reut_A2350: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Ralstonia metallidurans CH34 Gene: Rmet_2513: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Ralstonia pickettii 12J Gene: Rpic_0846: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Ralstonia solanacearum GMI1000 Gene: RS04307: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)	Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
h16_A2663	Cupriavidus taiwanensis Gene: RALTA_A2154: Glutathione S-transferase	Ralstonia eutropha H16 Gene: H16_A2663: Glutathione S-transferase	Ralstonia eutropha JMP134 Gene: Reut_A2351: Glutathione S-transferase	Ralstonia metallidurans CH34 Gene: Rmet_2514: Glutathione S-transferase	Ralstonia pickettii 12J Gene: Rpic_0845: Glutathione S-transferase	Ralstonia solanacearum GMI1000 Gene: RS04308: Glutathione S-transferase	Glutathione S-transferase

CRON 2.
PF01810	* Cupriavidus taiwanensis Site: position = -101 score = 13.8205 sequence = GACCTGTATCG-(13)-AAAGTGTACCG-(0)-GTACTGTACCG Gene: RALTA_A2694: Transporter, LysE family	* Ralstonia eutropha H16 Site: position = -91 score = 13.3421 sequence = GCGCCGTATCG-(13)-AAATTGTACCG-(0)-GTACTGTACCG Gene: H16_A3243: Transporter, LysE family	* Ralstonia eutropha JMP134 Site: position = -97 score = 12.9123 sequence = CTGCCGTCACG-(13)-AAACTGTACCG-(0)-GTACTGTACTG Gene: Reut_A2949: Transporter, LysE family	* Ralstonia metallidurans CH34 Site: position = -94 score = 10.9644 sequence = GGTCAGTACCG-(13)-AAAGTGTGCCG-(0)-GTACTGTATTG Gene: Rmet_3096: Transporter, LysE family	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Transporter, LysE family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog H16_A2655 - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --