Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YjiR - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895 1 1
Edwardsiella tarda EIB202
Enterobacter sp. 638 1 1
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043 1 1
Escherichia coli str. K-12 substr. MG1655 1 1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568 1 1
Yersinia pestis KIM
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yjiS
*
Citrobacter koseri ATCC BAA-895

Site:
position = -83
score = 16.0228
sequence = TACAGAA-(17)-TTCAGAT-(13)-ATCTGTA-(23)-ATCTGTA

Gene: CKO_03449: putative cytoplasmic protein of unknown function DUF1127
 
Edwardsiella tarda EIB202
*
Enterobacter sp. 638

Site:
position = -136
score = 16.5358
sequence = TACAGAT-(17)-TTCAGAA-(13)-ATCTGTA-(23)-ATCTGTA

Gene: Ent638_0495: putative cytoplasmic protein of unknown function DUF1127
 
Erwinia amylovora ATCC 49946
*
Erwinia carotovora subsp. atroseptica SCRI1043

Site:
position = -135
score = 16.3824
sequence = TACAGAT-(17)-TTCAGAT-(13)-ATCTGTA-(23)-GTCTGTA

Gene: ECA0226: putative cytoplasmic protein of unknown function DUF1127
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -136
score = 16.7574
sequence = TACAGAT-(17)-TGCAGAT-(13)-GTCTGTA-(23)-ATCTGTA

Gene: b4341: putative cytoplasmic protein of unknown function DUF1127
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2

Gene: STM4521: putative cytoplasmic protein of unknown function DUF1127
*
Serratia proteamaculans 568

Site:
position = -138
score = 15.8507
sequence = TACAGAT-(17)-TTCAGAC-(13)-TTTTGTA-(23)-ATCTGTA

Gene: Spro_1441: putative cytoplasmic protein of unknown function DUF1127
 
Yersinia pestis KIM
putative cytoplasmic protein of unknown function DUF1127
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD