Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Mll0059 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 2 2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099 2 2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 3 3
Rhizobium leguminosarum bv. viciae 3841 2 2
Rhizobium sp. NGR234 2 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 3 3
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Mll0059
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -10
score = 9.18016
sequence = AATTGTCA-(3)-TGACAAAT

Gene: Atu1848: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
*
Mesorhizobium loti MAFF303099

Site:
position = -10
score = 9.18016
sequence = AATTGTCA-(3)-TGACAAAT

Gene: mll0059: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -34
score = 6.01859
sequence = CAGAGTCA-(3)-TGACAATA

Site:
position = -10
score = 9.18016
sequence = AATTGTCA-(3)-TGACAAAT

Gene: RHE_CH02284: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -10
score = 9.18016
sequence = AATTGTCA-(3)-TGACAAAT

Gene: RL2610: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
*
Rhizobium sp. NGR234

Site:
position = -10
score = 9.00457
sequence = AATTGTCA-(3)-TGACAACT

Gene: NGR_c16240: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -10
score = 9.00457
sequence = AATTGTCA-(3)-TGACAACT

Gene: SMc00490: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
CRON 2.
PF06568
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -102
score = 9.18016
sequence = ATTTGTCA-(3)-TGACAATT

Gene: Atu1847: Domain of unknown function (DUF1127)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4466: Domain of unknown function (DUF1127)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
*2
Mesorhizobium loti MAFF303099

Gene: msr3036: Domain of unknown function (DUF1127)

Site:
position = -102
score = 9.18016
sequence = ATTTGTCA-(3)-TGACAATT

Gene: msr0060: Domain of unknown function (DUF1127)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -90
score = 9.18016
sequence = ATTTGTCA-(3)-TGACAATT

Site:
position = -66
score = 6.01859
sequence = TATTGTCA-(3)-TGACTCTG

Gene: RHE_CH02283: Domain of unknown function (DUF1127)
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -181
score = 9.00457
sequence = AGTTGTCA-(3)-TGACAATT

Gene: SMc00491: Domain of unknown function (DUF1127)
 
Xanthobacter autotrophicus Py2
Domain of unknown function (DUF1127)
 
CRON 3.
phzF
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll5643: Phenazine biosynthesis protein PhzF like
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -80
score = 5.98092
sequence = CATTGTCA-(3)-CGACAAGA

Gene: RHE_CH03501: Phenazine biosynthesis protein PhzF like
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -81
score = 5.98092
sequence = CATTGTCA-(3)-CGACAAGA

Gene: RL4013: Phenazine biosynthesis protein PhzF like
*
Rhizobium sp. NGR234

Site:
position = -84
score = 7.69412
sequence = AATTGTCA-(3)-AGACAAGT

Gene: NGR_c28110: Phenazine biosynthesis protein PhzF like
 
Rhodopseudomonas palustris CGA009

Gene: RPA3182: Phenazine biosynthesis protein PhzF like
*
Sinorhizobium meliloti 1021

Site:
position = -85
score = 7.69412
sequence = AATTGTCA-(3)-AGACAAGT

Gene: SMc03984: Phenazine biosynthesis protein PhzF like
 
Xanthobacter autotrophicus Py2
Phenazine biosynthesis protein PhzF like
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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