Regulog CBY_0654 - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium beijerincki NCIMB 8052 | ||
| Clostridium botulinum A str. ATCC 3502 | 3 | 2 |
| Clostridium butyricum 5521 | 2 | 2 |
| Clostridium kluyveri DSM 555 | ||
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | ||
| Clostridium tetani E88 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| phzF |
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Clostridium botulinum A str. ATCC 3502 Site: position = -100 score = 9.62469 sequence = TAATTGTCT-(3)-ATACAATTA Gene: CBO2035: Phenazine biosynthesis protein PhzF |
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Phenazine biosynthesis protein PhzF |
| COG251 (TdcF) |
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Gene: CBO2036: Putative translation initiation inhibitor, yjgF family |
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Putative translation initiation inhibitor, yjgF family |
| CRON 2. | |||||||||
| CBY_0654 |
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Clostridium botulinum A str. ATCC 3502 Site: position = -38 score = 9.62469 sequence = TAATTGTAT-(3)-AGACAATTA Gene: CBO2034: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Clostridium butyricum 5521 Site: position = -39 score = 7.80831 sequence = AAATTGTAT-(3)-AAACAATAT Gene: CBY_0654: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
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Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) |
| CRON 3. | |||||||||
| CBY_0653 |
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Gene: CBO1802: Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
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Clostridium butyricum 5521 Site: position = -92 score = 7.80831 sequence = ATATTGTTT-(3)-ATACAATTT Gene: CBY_0653: Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
Gene: CKL_0439: Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
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Gene: CTC02221: Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |