Regulog CBY_0654 - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052
Clostridium botulinum A str. ATCC 3502	3	2
Clostridium butyricum 5521	2	2
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
phzF	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	* Clostridium botulinum A str. ATCC 3502 Site: position = -100 score = 9.62469 sequence = TAATTGTCT-(3)-ATACAATTA Gene: CBO2035: Phenazine biosynthesis protein PhzF	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Phenazine biosynthesis protein PhzF
COG251 (TdcF)	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502 Gene: CBO2036: Putative translation initiation inhibitor, yjgF family	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Putative translation initiation inhibitor, yjgF family

CRON 2.
CBY_0654	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	* Clostridium botulinum A str. ATCC 3502 Site: position = -38 score = 9.62469 sequence = TAATTGTAT-(3)-AGACAATTA Gene: CBO2034: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	* Clostridium butyricum 5521 Site: position = -39 score = 7.80831 sequence = AAATTGTAT-(3)-AAACAATAT Gene: CBY_0654: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

CRON 3.
CBY_0653	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502 Gene: CBO1802: Pyridoxal phosphate-dependent transferase, major region, subdomain 1	* Clostridium butyricum 5521 Site: position = -92 score = 7.80831 sequence = ATATTGTTT-(3)-ATACAATTT Gene: CBY_0653: Pyridoxal phosphate-dependent transferase, major region, subdomain 1	Clostridium kluyveri DSM 555 Gene: CKL_0439: Pyridoxal phosphate-dependent transferase, major region, subdomain 1	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88 Gene: CTC02221: Pyridoxal phosphate-dependent transferase, major region, subdomain 1	Pyridoxal phosphate-dependent transferase, major region, subdomain 1

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CBY_0654 - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --