Regulog PdxQ2 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR
By pathway - Metabolite transport
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1	3	2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
COG0346	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -51 score = 8.5378 sequence = ATGAGTGTGCC-(0)-GTGACACTATT Gene: Daci_5877: Lactoylglutathione lyase and related lyases	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Lactoylglutathione lyase and related lyases
phzF	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4439: Phenazine biosynthesis protein PhzF	Acidovorax sp. JS42 Gene: Ajs_3846: Phenazine biosynthesis protein PhzF	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4334: Phenazine biosynthesis protein PhzF	2 Delftia acidovorans SPH-1 Gene: Daci_5876: Phenazine biosynthesis protein PhzF Gene: Daci_0592: Phenazine biosynthesis protein PhzF	Leptothrix cholodnii SP-6 Gene: Lcho_3538: Phenazine biosynthesis protein PhzF	Methylibium petroleiphilum PM1 Gene: Mpe_A0187: Phenazine biosynthesis protein PhzF	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0400: Phenazine biosynthesis protein PhzF	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3731: Phenazine biosynthesis protein PhzF	Variovorax paradoxus S110 Gene: Vapar_0741: Phenazine biosynthesis protein PhzF	Verminephrobacter eiseniae EF01-2	Phenazine biosynthesis protein PhzF

CRON 2.
pdxQ2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -40 score = 8.5378 sequence = AATAGTGTCAC-(0)-GGCACACTCAT Gene: Daci_5878: Transcriptional regulator, GntR/MocR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Transcriptional regulator, GntR/MocR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ2 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --