Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ2 - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1 5 2
Sphingopyxis alaskensis RB2256
Zymomonas mobilis subsp. mobilis ZM4 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxQ2
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -31
score = 8.46045
sequence = CATATTGTCAC-(1)-GTGACATTAAA

Gene: Swit_4755: Transcriptional regulator, GntR/MocR family
 
Sphingopyxis alaskensis RB2256
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -35
score = 8.9636
sequence = TATAGTGTCAC-(0)-ATTACACTTTT

Gene: ZMO1944: Transcriptional regulator, GntR/MocR family
Transcriptional regulator, GntR/MocR family
pdxH
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13435: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Erythrobacter sp. NAP1

Gene: NAP1_12643: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0048: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-01770: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Sphingomonas wittichii RW1

Gene: Swit_4754: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0654: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0851: Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)
ELI_13440
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13440: Cobalt-zinc-cadmium resistance protein
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0047: Cobalt-zinc-cadmium resistance protein
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4753: Cobalt-zinc-cadmium resistance protein
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Cobalt-zinc-cadmium resistance protein
phzF
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13445: Phenazine biosynthesis protein PhzF
 
Erythrobacter sp. NAP1

Gene: NAP1_12638: Phenazine biosynthesis protein PhzF
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0046: Phenazine biosynthesis protein PhzF
 
Sphingobium japonicum UT26S

Gene: SJA_C1-01700: Phenazine biosynthesis protein PhzF
 
Sphingomonas wittichii RW1

Gene: Swit_4752: Phenazine biosynthesis protein PhzF
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0653: Phenazine biosynthesis protein PhzF
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -86
score = 8.9636
sequence = AAAAGTGTAAT-(0)-GTGACACTATA

Gene: ZMO1945: Phenazine biosynthesis protein PhzF
Phenazine biosynthesis protein PhzF
 
CRON 2.
PF01810
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -285
score = 8.46045
sequence = TTTAATGTCAC-(1)-GTGACAATATG

Gene: Swit_4757: Transporter, LysE family
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1362: Transporter, LysE family
 
Zymomonas mobilis subsp. mobilis ZM4
Transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD