Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PTD2_03046 - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2 2 2
Alteromonas macleodii 'Deep ecotype'
Alteromonadales bacterium TW-7
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
 
Pseudoalteromonas atlantica T6c
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -26
score = 8.23786
sequence = AATTGTATG-(0)-CGTACAATT

Site:
position = -111
score = 7.96834
sequence = AATTGTCAT-(1)-AGTACAATA

Gene: PTD2_03041: Transporter, LysE family
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
Transporter, LysE family
 
CRON 2.
PTD2_03046
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
 
Pseudoalteromonas atlantica T6c
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -49
score = 8.23786
sequence = AATTGTACG-(0)-CATACAATT

Gene: PTD2_03046: Transcriptional regulator, GntR family
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD