Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 2 2
Arthrobacter chlorophenolicus A6 3 2
Arthrobacter sp. FB24 3 2
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649 2 2
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
*
Arthrobacter aurescens TC1

Site:
position = -16
score = 9.12848
sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT

Gene: AAur_0278: Permease of the drug/metabolite transporter (DMT) superfamily
*
Arthrobacter chlorophenolicus A6

Site:
position = -55
score = 9.12848
sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT

Gene: Achl_1140: Permease of the drug/metabolite transporter (DMT) superfamily
*
Arthrobacter sp. FB24

Site:
position = -55
score = 9.12848
sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT

Gene: Arth_2456: Permease of the drug/metabolite transporter (DMT) superfamily
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
*
Janibacter sp. HTCC2649

Site:
position = -103
score = 8.87952
sequence = GGTGCTATCGT-(15)-ATGATAGCGCT

Gene: JNB_02485: Permease of the drug/metabolite transporter (DMT) superfamily
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx22470: Permease of the drug/metabolite transporter (DMT) superfamily
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Permease of the drug/metabolite transporter (DMT) superfamily
pdxO2
 
Arthrobacter aurescens TC1

Gene: AAur_0277: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Arthrobacter chlorophenolicus A6

Gene: Achl_1141: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Arthrobacter sp. FB24

Gene: Arth_2455: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
CRON 2.
pdxQ
*
Arthrobacter aurescens TC1

Site:
position = -19
score = 9.12848
sequence = AGCGCTACTAT-(15)-ACGATAGCAGT

Gene: AAur_0279: Transcriptional regulator, GntR/MocR family
*
Arthrobacter chlorophenolicus A6

Site:
position = -19
score = 9.12848
sequence = AGCGCTACTAT-(15)-ACGATAGCAGT

Gene: Achl_1139: Transcriptional regulator, GntR/MocR family
*
Arthrobacter sp. FB24

Site:
position = -19
score = 9.12848
sequence = AGCGCTACTAT-(15)-ACGATAGCAGT

Gene: Arth_2457: Transcriptional regulator, GntR/MocR family
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
*
Janibacter sp. HTCC2649

Site:
position = -19
score = 8.87952
sequence = AGCGCTATCAT-(15)-ACGATAGCACC

Gene: JNB_02495: Transcriptional regulator, GntR/MocR family
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Transcriptional regulator, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD