Regulog PdxQ - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis; Metabolite transport
Effector:	Pyridoxal-5-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine/pyridoxal homeostasis
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	2	2
Arthrobacter chlorophenolicus A6	3	2
Arthrobacter sp. FB24	3	2
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649	2	2
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
PF00892	* Arthrobacter aurescens TC1 Site: position = -16 score = 9.12848 sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT Gene: AAur_0278: Permease of the drug/metabolite transporter (DMT) superfamily	* Arthrobacter chlorophenolicus A6 Site: position = -55 score = 9.12848 sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT Gene: Achl_1140: Permease of the drug/metabolite transporter (DMT) superfamily	* Arthrobacter sp. FB24 Site: position = -55 score = 9.12848 sequence = ACTGCTATCGT-(15)-ATAGTAGCGCT Gene: Arth_2456: Permease of the drug/metabolite transporter (DMT) superfamily	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	* Janibacter sp. HTCC2649 Site: position = -103 score = 8.87952 sequence = GGTGCTATCGT-(15)-ATGATAGCGCT Gene: JNB_02485: Permease of the drug/metabolite transporter (DMT) superfamily	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx22470: Permease of the drug/metabolite transporter (DMT) superfamily	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Permease of the drug/metabolite transporter (DMT) superfamily
pdxO2	Arthrobacter aurescens TC1 Gene: AAur_0277: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Arthrobacter chlorophenolicus A6 Gene: Achl_1141: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Arthrobacter sp. FB24 Gene: Arth_2455: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

CRON 2.
pdxQ	* Arthrobacter aurescens TC1 Site: position = -19 score = 9.12848 sequence = AGCGCTACTAT-(15)-ACGATAGCAGT Gene: AAur_0279: Transcriptional regulator, GntR/MocR family	* Arthrobacter chlorophenolicus A6 Site: position = -19 score = 9.12848 sequence = AGCGCTACTAT-(15)-ACGATAGCAGT Gene: Achl_1139: Transcriptional regulator, GntR/MocR family	* Arthrobacter sp. FB24 Site: position = -19 score = 9.12848 sequence = AGCGCTACTAT-(15)-ACGATAGCAGT Gene: Arth_2457: Transcriptional regulator, GntR/MocR family	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	* Janibacter sp. HTCC2649 Site: position = -19 score = 8.87952 sequence = AGCGCTATCAT-(15)-ACGATAGCACC Gene: JNB_02495: Transcriptional regulator, GntR/MocR family	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Transcriptional regulator, GntR/MocR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --