Regulog BPSS1200 - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	1	1
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815	1	1
Burkholderia pseudomallei K96243	2	1
Burkholderia sp. 383	2	1
Burkholderia vietnamiensis G4	2	1
Burkholderia xenovorans LB400	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF02627	* Burkholderia cepacia AMMD Site: position = -107 score = 12.5418 sequence = ACTGGTTAC-(15)-ATTGGCCAT-(5)-CAGGCCAGT Gene: Bamb_3693: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -107 score = 13.1537 sequence = AGTGGTCAC-(15)-ATTGGCCAT-(5)-ATGGCCAGT Gene: Bphy_4060: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	* Burkholderia pseudomallei K96243 Site: position = -118 score = 12.6856 sequence = GGCGGTCTC-(15)-ATTGGCTAT-(5)-ATAGCCACC Gene: BPSS1201: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	* Burkholderia sp. 383 Site: position = -107 score = 12.4822 sequence = ACTGGTTAC-(15)-ATTGGCCAT-(5)-CAGGCCAGC Gene: Bcep18194_B1741: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	* Burkholderia vietnamiensis G4 Site: position = -107 score = 12.4674 sequence = GGTGGTCAC-(15)-ATTGGTCAT-(5)-CGGGCCAGT Gene: Bcep1808_4831: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	* Burkholderia xenovorans LB400 Site: position = -109 score = 10.9893 sequence = AGTGGTTAC-(15)-ACTGGTCAT-(5)-GAGTCCAAT Gene: Bxe_B1427: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
PF02525	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400 Gene: Bxe_B1426: FMN-dependent NADH-azoreductase	FMN-dependent NADH-azoreductase
PF07883	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243 Gene: BPSS1202: Cupin 2, conserved barrel	Burkholderia sp. 383 Gene: Bcep18194_B1742: Cupin 2, conserved barrel	Burkholderia vietnamiensis G4 Gene: Bcep1808_4830: Cupin 2, conserved barrel	Burkholderia xenovorans LB400 Gene: Bxe_B1425: Cupin 2, conserved barrel	Cupin 2, conserved barrel

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BPSS1200 - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --