Regulog PA0268 - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1	2	1
Pseudomonas entomophila L48	1	1
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp	2	1
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF02627	Azotobacter vinelandii AvOP	* Pseudomonas aeruginosa PAO1 Site: position = -120 score = 14.4141 sequence = ATTGGCTAC-(15)-ATTGGCTCT-(5)-GAAGCCAAA Gene: PA0269: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	* Pseudomonas entomophila L48 Site: position = -92 score = 11.7053 sequence = ATTGGCCTC-(15)-ATTGGCTAT-(5)-GGCGGCAGC Gene: PSEEN3195: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -106 score = 11.8169 sequence = ATTGGCCTC-(15)-ATTGGCTAT-(5)-CAGTCCGTA Gene: Pmen_1084: 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein
PF00892	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1083: Permease of the drug/metabolite transporter (DMT) superfamily	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Permease of the drug/metabolite transporter (DMT) superfamily
PF07883	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1 Gene: PA0270: Cupin 2, conserved barrel	Pseudomonas entomophila L48 Gene: PSEEN1633: Cupin 2, conserved barrel	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Cupin 2, conserved barrel

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PA0268 - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --