Regulog PdxW2 - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 1 | 1 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia phymatum STM815 | 1 | 1 |
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia sp. 383 | 1 | 1 |
| Burkholderia vietnamiensis G4 | ||
| Burkholderia xenovorans LB400 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pdxO2 |
*
Burkholderia cepacia AMMD Site: position = -125 score = 11.6519 sequence = TCTGGTCT-(16)-ACCGGCTC-(8)-AAACCAGT Gene: Bamb_4616: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Burkholderia glumae BGR1 Site: position = -109 score = 12.2454 sequence = TCTGGCCT-(16)-ACTGGCCC-(8)-AAGCCAGA Gene: bglu_2g19630: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Burkholderia mallei ATCC 23344 Site: position = -118 score = 9.90452 sequence = TCCGGTTC-(16)-ACTGGTTC-(8)-AAACCGGT Gene: BMA3062: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Burkholderia phymatum STM815 Site: position = -110 score = 11.4059 sequence = TCTGGTTC-(16)-ACTGGATC-(8)-AAACCAGT Gene: Bphy_5850: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Burkholderia pseudomallei K96243 Site: position = -118 score = 9.90452 sequence = TCCGGTTC-(16)-ACTGGTTC-(8)-AAACCGGT Gene: BPSL1309: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Burkholderia sp. 383 Site: position = -120 score = 11.6519 sequence = TCTGGTCT-(16)-ACCGGCTC-(8)-AAACCAGT Gene: Bcep18194_B0396: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Bcep1808_3517: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Bxe_B2937: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |