Regulog GabR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
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| Chromobacterium violaceum ATCC 12472 | ||
| Laribacter hongkongensis HLHK9 | ||
| Neisseria meningitidis MC58 | ||
| Azoarcus sp. EbN1 | ||
| Dechloromonas aromatica RCB | ||
| Thauera sp. MZ1T | 6 | 1 |
| Methylobacillus flagellatus KT | ||
| Methylophilales bacterium HTCC2181 | ||
| Methylotenera mobilis JLW8 | ||
| Nitrosomonas europaea ATCC 19718 | ||
| Nitrosospira multiformis ATCC 25196 | ||
| Thiobacillus denitrificans |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| gbtA |
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Thauera sp. MZ1T Site: position = -105 score = 11.5561 sequence = ATTGGTTC-(16)-ATTGGATC-(6)-GGGCCAAT Gene: Tmz1t_0424: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
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Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
| gbtD |
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Gene: Tmz1t_0425: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
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Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
| gbtB |
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Gene: Tmz1t_0426: Predicted gamma-aminobutyrate ABC transporter, permease component |
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Predicted gamma-aminobutyrate ABC transporter, permease component |
| gbtC |
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Gene: Tmz1t_0427: Predicted gamma-aminobutyrate ABC transporter, permease component |
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Predicted gamma-aminobutyrate ABC transporter, permease component |
| gabD |
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Gene: ebA2996: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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Gene: Tmz1t_0428: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
| gabT |
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Gene: Tmz1t_0429: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |