Regulog GabR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T	6	1
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
gbtA	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	* Thauera sp. MZ1T Site: position = -105 score = 11.5561 sequence = ATTGGTTC-(16)-ATTGGATC-(6)-GGGCCAAT Gene: Tmz1t_0424: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0425: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0426: Predicted gamma-aminobutyrate ABC transporter, permease component	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0427: Predicted gamma-aminobutyrate ABC transporter, permease component	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Predicted gamma-aminobutyrate ABC transporter, permease component
gabD	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1 Gene: ebA2996: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0428: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
gabT	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T Gene: Tmz1t_0429: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --