Regulog GabR - Moraxellaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Moraxellaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acinetobacter baumannii AB0057 | 2 | 1 |
| Acinetobacter sp. ADP1 | 3 | 2 |
| Psychrobacter arcticum 273-4 | ||
| Psychrobacter sp. PRwf-1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| gabT |
*
Acinetobacter baumannii AB0057 Site: position = -156 score = 14.0793 sequence = TTGGCTCT-(16)-GTGGCTCT-(5)-GTTGGCAT Gene: AB57_3728: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Acinetobacter sp. ADP1 Site: position = -152 score = 13.6737 sequence = TTGGCTCT-(16)-GTGGCTCT-(5)-GTTGACGC Gene: ACIAD3446: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
|
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabD |
Gene: AB57_3727: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: ACIAD3445: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
|
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
| CRON 2. | |||||
| gabP |
Gene: AB57_3730: Gamma-aminobutyrate permease |
*
Acinetobacter sp. ADP1 Site: position = -218 score = 11.3042 sequence = TTGGCTCT-(16)-ATGGCTCT-(5)-ATTGAGAC Gene: ACIAD3448: Gamma-aminobutyrate permease |
|
|
Gamma-aminobutyrate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |