Regulog GabR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | ||
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | 4 | 1 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 2 | 1 |
| Escherichia coli str. K-12 substr. MG1655 | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 1 | 1 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | ||
| Serratia proteamaculans 568 | 2 | 1 |
| Yersinia pestis KIM | 4 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| gabT |
Gene: CKO_04884: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
Gene: Ent638_3864: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Erwinia amylovora ATCC 49946 Site: position = -181 score = 10.3605 sequence = TTGGTTCC-(15)-CTGGCTCT-(7)-AAAACCCC Gene: EAM_2305: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -145 score = 12.1375 sequence = GTGGATCC-(15)-CTGGCACT-(7)-AGAACCAT Gene: ECA2053: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -118 score = 12.4408 sequence = TTGGATCC-(15)-TTGGTACT-(7)-AGGGCCAA Gene: KPN_03825: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
|
|
|
*
Serratia proteamaculans 568 Site: position = -128 score = 12.6672 sequence = TTGGATCC-(15)-CTGGCTCT-(7)-AGGGCCAC Gene: Spro_4306: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Yersinia pestis KIM Site: position = -155 score = 12.3687 sequence = TTGGCACC-(14)-TTGGCACT-(7)-AGGGCGAC Gene: y1390: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gbtD |
|
|
|
Gene: EAM_2306: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: ECA2055: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
|
|
|
|
|
|
Gene: y1391: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
| gbtB |
|
|
|
Gene: EAM_2307: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: ECA2056: Predicted gamma-aminobutyrate ABC transporter, permease component |
|
|
|
|
|
|
Gene: y1392: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| gbtC |
|
|
|
Gene: EAM_2308: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: ECA2057: Predicted gamma-aminobutyrate ABC transporter, permease component |
|
|
|
|
|
|
Gene: y1393: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| gabD |
|
|
|
|
Gene: ECA2054: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
|
|
|
|
Gene: Spro_4305: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |