Regulog GabR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946	4	1
Erwinia carotovora subsp. atroseptica SCRI1043	2	1
Escherichia coli str. K-12 substr. MG1655
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	1	1
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568	2	1
Yersinia pestis KIM	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
gabT	Citrobacter koseri ATCC BAA-895 Gene: CKO_04884: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Edwardsiella tarda EIB202	Enterobacter sp. 638 Gene: Ent638_3864: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Erwinia amylovora ATCC 49946 Site: position = -181 score = 10.3605 sequence = TTGGTTCC-(15)-CTGGCTCT-(7)-AAAACCCC Gene: EAM_2305: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -145 score = 12.1375 sequence = GTGGATCC-(15)-CTGGCACT-(7)-AGAACCAT Gene: ECA2053: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Escherichia coli str. K-12 substr. MG1655	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -118 score = 12.4408 sequence = TTGGATCC-(15)-TTGGTACT-(7)-AGGGCCAA Gene: KPN_03825: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	* Serratia proteamaculans 568 Site: position = -128 score = 12.6672 sequence = TTGGATCC-(15)-CTGGCTCT-(7)-AGGGCCAC Gene: Spro_4306: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Yersinia pestis KIM Site: position = -155 score = 12.3687 sequence = TTGGCACC-(14)-TTGGCACT-(7)-AGGGCGAC Gene: y1390: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gbtD	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946 Gene: EAM_2306: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2055: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y1391: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946 Gene: EAM_2307: Predicted gamma-aminobutyrate ABC transporter, permease component	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2056: Predicted gamma-aminobutyrate ABC transporter, permease component	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y1392: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946 Gene: EAM_2308: Predicted gamma-aminobutyrate ABC transporter, permease component	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2057: Predicted gamma-aminobutyrate ABC transporter, permease component	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y1393: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
gabD	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2054: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_4305: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Yersinia pestis KIM	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --