Regulog TauR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Taurine utilization |
| Effector: | Taurine |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/MocR
- By effector - Taurine
- By pathway - Taurine utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 10 | 4 |
| Ralstonia eutropha H16 | 8 | 3 |
| Ralstonia eutropha JMP134 | 5 | 2 |
| Ralstonia metallidurans CH34 | ||
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| tauX |
*
Cupriavidus taiwanensis Site: position = -114 score = 9.47712 sequence = CTGGCCCAAG-(13)-CTGGCGCTAC Gene: RALTA_B1591: Putative small subunit of taurine dehydrogenase |
*
Ralstonia eutropha H16 Site: position = -113 score = 9.47712 sequence = CTGGCCCAAG-(13)-CTGGCGCTAC Gene: H16_B1892: Putative small subunit of taurine dehydrogenase |
*
Ralstonia eutropha JMP134 Site: position = -148 score = 9.45318 sequence = CTGGCCCAAG-(13)-CTGGTCCTAC Gene: Reut_B3751: Putative small subunit of taurine dehydrogenase |
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Putative small subunit of taurine dehydrogenase |
| tauY |
Gene: RALTA_B1592: Taurine dehydrogenase, large subunit |
Gene: H16_B1893: Taurine dehydrogenase, large subunit |
Gene: Reut_B3750: Taurine dehydrogenase, large subunit |
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Taurine dehydrogenase, large subunit |
| CRON 2. | |||||||
| tauM |
*
Cupriavidus taiwanensis Site: position = -43 score = 6.56724 sequence = GTGGCCGCAT-(13)-CTGGACCGGA Gene: RALTA_A1247: TRAP-type taurine transporter, small permease component |
Gene: H16_A1326: TRAP-type taurine transporter, small permease component |
Gene: Reut_A1264: TRAP-type taurine transporter, small permease component |
Gene: Rmet_1148: TRAP-type taurine transporter, small permease component |
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TRAP-type taurine transporter, small permease component |
| tauL |
Gene: RALTA_A1248: TRAP-type taurine transporter, large permease component |
Gene: H16_A1327: TRAP-type taurine transporter, large permease component |
Gene: Reut_A1265: TRAP-type taurine transporter, large permease component |
Gene: Rmet_1149: TRAP-type taurine transporter, large permease component |
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TRAP-type taurine transporter, large permease component |
| tauK |
Gene: RALTA_A1249: TRAP-type taurine transporter, periplasmatic component |
Gene: H16_A1328: TRAP-type taurine transporter, periplasmatic component |
Gene: Reut_A1266: TRAP-type taurine transporter, periplasmatic component |
Gene: Rmet_1150: TRAP-type taurine transporter, periplasmatic component |
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TRAP-type taurine transporter, periplasmatic component |
| CRON 3. | |||||||
| tauC2 |
*
Cupriavidus taiwanensis Site: position = -57 score = 7.40373 sequence = CTGGCCGAAG-(13)-CTGGCGCAAG Gene: RALTA_B1998: Taurine transport system permease protein TauC |
*
Ralstonia eutropha H16 Site: position = -57 score = 7.40373 sequence = CTGGCCGAAG-(13)-CTGGCGCAAG Gene: H16_B2225: Taurine transport system permease protein TauC |
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Taurine transport system permease protein TauC |
| tauB2 |
Gene: RALTA_B1999: Taurine transport ATP-binding protein TauB |
Gene: H16_B2226: Taurine transport ATP-binding protein TauB |
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Taurine transport ATP-binding protein TauB |
| tauD |
Gene: RALTA_B2000: Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) |
Gene: H16_B2227: Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) |
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Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) |
| CRON 4. | |||||||
| tauA |
*
Cupriavidus taiwanensis Site: position = -102 score = 8.58242 sequence = CTGGCCCCAC-(13)-CTGGTCCTAT Gene: RALTA_B0795: Taurine-binding periplasmic protein TauA |
*
Ralstonia eutropha H16 Site: position = -103 score = 8.79776 sequence = CTGGTCCCAG-(13)-CTGGTCCTAT Gene: H16_B0888: Taurine-binding periplasmic protein TauA |
*
Ralstonia eutropha JMP134 Site: position = -289 score = 8.86574 sequence = CTGGACCCAA-(13)-CTGGCACTAA Gene: Reut_A1472: Taurine-binding periplasmic protein TauA |
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Gene: Rpic_2885: Taurine-binding periplasmic protein TauA |
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Taurine-binding periplasmic protein TauA |
| tauB |
Gene: RALTA_B0794: Taurine transport ATP-binding protein TauB |
Gene: H16_B0889: Taurine transport ATP-binding protein TauB |
Gene: Reut_A1471: Taurine transport ATP-binding protein TauB |
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Gene: Rpic_2884: Taurine transport ATP-binding protein TauB |
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Taurine transport ATP-binding protein TauB |
| tauC |
Gene: RALTA_B0793: Taurine transport system permease protein TauC |
Gene: H16_B0890: Taurine transport system permease protein TauC |
Gene: Reut_A1470: Taurine transport system permease protein TauC |
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Gene: Rpic_2883: Taurine transport system permease protein TauC |
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Taurine transport system permease protein TauC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |