Regulog Vapar_5644 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
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| Effector: | |
| Phylum: | Proteobacteria/Beta |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 2 | 1 |
| Verminephrobacter eiseniae EF01-2 | 2 | 1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| PF07681 |
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Verminephrobacter eiseniae EF01-2 Site: position = -143 score = 10.3615 sequence = GCTTGTCATGGT-(12)-TCTTGCCCCTTA-(4)-AAACTGCCAGAT Gene: Veis_1595: hypothetical protein |
hypothetical protein |
| PF02627 |
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Gene: Vapar_6203: Carboxymuconolactone decarboxylase |
Gene: Veis_1594: Carboxymuconolactone decarboxylase |
Carboxymuconolactone decarboxylase |
| CRON 2. | ||||||||||||
| PF01370 |
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Variovorax paradoxus S110 Site: position = -91 score = 13.3017 sequence = TCATGGCCCATT-(12)-TCTTGGCTCTTT-(2)-AATGGTGCATCG Gene: Vapar_5643: NAD-dependent epimerase/dehydratase |
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NAD-dependent epimerase/dehydratase |
| PF07883 |
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Gene: Vapar_5642: Cupin 2 conserved barrel domain protein |
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Cupin 2 conserved barrel domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |