Regulog Bamb_5788 - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	1	1
Burkholderia glumae BGR1	3	2
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815
Burkholderia pseudomallei K96243
Burkholderia sp. 383	2	1
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF01370	* Burkholderia cepacia AMMD Site: position = -163 score = 12.6267 sequence = GTATGGACCAGT-(12)-TCTTGGCACTTA-(3)-GATAGGACATGA Gene: Bamb_5787: NAD-dependent epimerase/dehydratase	* Burkholderia glumae BGR1 Site: position = -156 score = 11.9018 sequence = CCATGTCCTGGT-(12)-ATTTGGACCTTA-(1)-GGCGGGCCATCG Gene: bglu_1g30110: NAD-dependent epimerase/dehydratase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5347: NAD-dependent epimerase/dehydratase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	NAD-dependent epimerase/dehydratase

CRON 2.
PF00583	Burkholderia cepacia AMMD	* Burkholderia glumae BGR1 Site: position = -92 score = 10.4332 sequence = CGATGTCCTAGC-(12)-TTCTGGCTCTGT-(2)-GCCGTGACGTGG Gene: bglu_2g19120: GCN5-related N-acetyltransferase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -88 score = 12.6847 sequence = TCATGTCCCAGT-(12)-TTTTGGACCTTC-(2)-GATACGCCATCC Gene: Bcep18194_B3075: GCN5-related N-acetyltransferase	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	GCN5-related N-acetyltransferase
PF02525	Burkholderia cepacia AMMD	Burkholderia glumae BGR1 Gene: bglu_2g19110: FMN-dependent NADH-azoreductase	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_B3076: FMN-dependent NADH-azoreductase	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	FMN-dependent NADH-azoreductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Bamb_5788 - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --