Regulog H16_B1411 - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16	6	2
Ralstonia eutropha JMP134	2	1
Ralstonia metallidurans CH34
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
PF00583	Cupriavidus taiwanensis Gene: RALTA_B1549: GCN5-related N-acetyltransferase	* Ralstonia eutropha H16 Site: position = -93 score = 9.51881 sequence = CGATGGCCTAGT-(12)-ACATGTGCCTGT-(2)-ACTGTGTCATCG Gene: H16_B1407: GCN5-related N-acetyltransferase	Ralstonia eutropha JMP134 Gene: Reut_A3274: GCN5-related N-acetyltransferase	Ralstonia metallidurans CH34 Gene: Rmet_3439: GCN5-related N-acetyltransferase	Ralstonia pickettii 12J Gene: Rpic_3957: GCN5-related N-acetyltransferase	Ralstonia solanacearum GMI1000	GCN5-related N-acetyltransferase
PF05368	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_B1406: NmrA-like domain	* Ralstonia eutropha JMP134 Site: position = -157 score = 11.1028 sequence = ACTTGGCCTAGT-(12)-TCTTGGCCCTTA-(2)-CATAGGGCATGA Gene: Reut_A1579: NmrA-like domain	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	NmrA-like domain
PF02627	Cupriavidus taiwanensis Gene: RALTA_A1404: Carboxymuconolactone decarboxylase	Ralstonia eutropha H16 Gene: H16_B1405: Carboxymuconolactone decarboxylase	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Carboxymuconolactone decarboxylase
PF07883	Cupriavidus taiwanensis Gene: RALTA_A1405: Cupin 2, conserved barrel	Ralstonia eutropha H16 Gene: H16_B1404: Cupin 2, conserved barrel	Ralstonia eutropha JMP134 Gene: Reut_A1578: Cupin 2, conserved barrel	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Cupin 2, conserved barrel

CRON 2.
h16_B1410	Cupriavidus taiwanensis	* Ralstonia eutropha H16 Site: position = -163 score = 9.20808 sequence = CGATGGCCCAGT-(12)-ACATGTGCCTGT-(2)-ACTGAGTCATCG Gene: H16_B1410: Non-heme chloroperoxidase	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Non-heme chloroperoxidase
h16_B1409	Cupriavidus taiwanensis	Ralstonia eutropha H16 Gene: H16_B1409: amidase related to nicotinamidase	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	amidase related to nicotinamidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog H16_B1411 - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --