Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ArgR - Deinococcus-Thermus

Properties
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine biosynthesis
Effector: Arginine
Phylum: Deinococcus-Thermus
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus deserti VCD115 14 3
Deinococcus geothermalis DSM 11300 9 2
Deinococcus radiodurans R1 14 2
Thermus aquaticus Y51MC23 12 3
Thermus thermophilus HB27 11 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
carB
*
Deinococcus deserti VCD115

Site:
position = -62
score = 4.63001
sequence = TGCATAACCATACA

Gene: Deide_00700: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
*
Deinococcus geothermalis DSM 11300

Site:
position = -64
score = 4.55013
sequence = TGCATAACCTTGCA

Gene: Dgeo_2070: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Deinococcus radiodurans R1

Gene: DR0668: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
*
Thermus aquaticus Y51MC23

Site:
position = -68
score = 4.38878
sequence = CGCATACCTTTGCC

Gene: TaqDRAFT_5409: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
*
Thermus thermophilus HB27

Site:
position = -69
score = 4.439
sequence = TGCATATTTATGCC

Gene: TTC0247: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
CRON 2.
argF
*
Deinococcus deserti VCD115

Site:
position = -166
score = 4.29904
sequence = TGCATACTTACACA

Gene: Deide_07060: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1605: Ornithine carbamoyltransferase (EC 2.1.3.3)
*
Deinococcus radiodurans R1

Site:
position = -31
score = 4.18611
sequence = CGCATAACTTTGAG

Gene: DR0080: Ornithine carbamoyltransferase (EC 2.1.3.3)
*
Thermus aquaticus Y51MC23

Site:
position = -38
score = 4.7624
sequence = TGCATAAGTTTGCA

Site:
position = -147
score = 4.43219
sequence = CGCAAAGCCATGCG

Gene: TaqDRAFT_3560: Ornithine carbamoyltransferase (EC 2.1.3.3)
*
Thermus thermophilus HB27

Site:
position = -148
score = 4.05884
sequence = CGCAAGGCCATGCG

Site:
position = -38
score = 4.66534
sequence = TGCATAAGTTTGCG

Gene: TTC0838: Ornithine carbamoyltransferase (EC 2.1.3.3)
Ornithine carbamoyltransferase (EC 2.1.3.3)
COG4636
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3559: Conserved hypothetical protein, DUF820
 
Thermus thermophilus HB27

Gene: TTC0837: Conserved hypothetical protein, DUF820
Conserved hypothetical protein, DUF820
argC
 
Deinococcus deserti VCD115

Gene: Deide_07080: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1604: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Deinococcus radiodurans R1

Gene: DR0078: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3558: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Thermus thermophilus HB27

Gene: TTC0836: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ
 
Deinococcus deserti VCD115

Gene: Deide_10200: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_0742: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Deinococcus radiodurans R1

Gene: DR1704: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3557: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Thermus thermophilus HB27

Gene: TTC0835: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
yfcD
 
Deinococcus deserti VCD115

Gene: Deide_07070: Putative NUDIX hydrolase
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1

Gene: DR0079: Putative NUDIX hydrolase
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Putative NUDIX hydrolase
 
CRON 3.
argG
*
Deinococcus deserti VCD115

Site:
position = -155
score = 4.98248
sequence = TGTATAGCTATGCG

Site:
position = -134
score = 4.06331
sequence = CGCATAACCATTCA

Gene: Deide_00720: Argininosuccinate synthase (EC 6.3.4.5)
*
Deinococcus geothermalis DSM 11300

Site:
position = -163
score = 4.98248
sequence = TGCATAGCTATACG

Site:
position = -142
score = 4.02068
sequence = CGTATAACGATACA

Gene: Dgeo_2067: Argininosuccinate synthase (EC 6.3.4.5)
*
Deinococcus radiodurans R1

Site:
position = -155
score = 5.1718
sequence = TGCATAGCTATGCG

Site:
position = -135
score = 4.16037
sequence = TGCATAGTCATTCA

Gene: DR0674: Argininosuccinate synthase (EC 6.3.4.5)
*
Thermus aquaticus Y51MC23

Site:
position = -44
score = 4.65297
sequence = TGTATACTTATACA

Gene: TaqDRAFT_4745: Argininosuccinate synthase (EC 6.3.4.5)
*
Thermus thermophilus HB27

Site:
position = -46
score = 4.84229
sequence = TGTATACTTATGCA

Gene: TTC1701: Argininosuccinate synthase (EC 6.3.4.5)
Argininosuccinate synthase (EC 6.3.4.5)
PF04978
 
Deinococcus deserti VCD115

Gene: Deide_00730: Conserved hypothetical protein
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1

Gene: DR0675: Conserved hypothetical protein
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Conserved hypothetical protein
COG3153
 2
Deinococcus deserti VCD115

Gene: Deide_00740: Putative N-acetyltransferase

Gene: Deide_00750: Putative N-acetyltransferase
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2066: Putative N-acetyltransferase
 2
Deinococcus radiodurans R1

Gene: DR0676: Putative N-acetyltransferase

Gene: DR0677: Putative N-acetyltransferase
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Putative N-acetyltransferase
argH
 
Deinococcus deserti VCD115

Gene: Deide_00760: Argininosuccinate lyase (EC 4.3.2.1)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2065: Argininosuccinate lyase (EC 4.3.2.1)
 
Deinococcus radiodurans R1

Gene: DR0678: Argininosuccinate lyase (EC 4.3.2.1)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4746: Argininosuccinate lyase (EC 4.3.2.1)
 
Thermus thermophilus HB27

Gene: TTC1702: Argininosuccinate lyase (EC 4.3.2.1)
Argininosuccinate lyase (EC 4.3.2.1)
COG1669
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 2
Deinococcus radiodurans R1

Gene: DR0679: Predicted nucleotidyltransferase

Gene: DR0680: Predicted nucleotidyltransferase
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Predicted nucleotidyltransferase
argA
 3
Deinococcus deserti VCD115

Gene: Deide_00770: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: Deide_00780: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: Deide_00790: N-acetylglutamate synthase (EC 2.3.1.1)
 3
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2063: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: Dgeo_2062: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: Dgeo_2061: N-acetylglutamate synthase (EC 2.3.1.1)
 3
Deinococcus radiodurans R1

Gene: DR0681: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: DR0682: N-acetylglutamate synthase (EC 2.3.1.1)

Gene: DR0683: N-acetylglutamate synthase (EC 2.3.1.1)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4747: N-acetylglutamate synthase (EC 2.3.1.1)
 
Thermus thermophilus HB27

Gene: TTC1703: N-acetylglutamate synthase (EC 2.3.1.1)
N-acetylglutamate synthase (EC 2.3.1.1)
carA
 
Deinococcus deserti VCD115

Gene: Deide_00810: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2060: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
 
Deinococcus radiodurans R1

Gene: DR0684: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
 2
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4751: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)

Gene: TaqDRAFT_4750: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
 
Thermus thermophilus HB27

Gene: TTC1706: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
Deide_00800
 
Deinococcus deserti VCD115

Gene: Deide_00800: Hypothetical protein
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Hypothetical protein
PF01230
 
Deinococcus deserti VCD115

Gene: Deide_12650: Histidine triad (HIT) protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_2064: Histidine triad (HIT) protein
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23
 
Thermus thermophilus HB27
Histidine triad (HIT) protein
TTC1704
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4748: Hypothetical protein, UPF0150
 
Thermus thermophilus HB27

Gene: TTC1704: Hypothetical protein, UPF0150
Hypothetical protein, UPF0150
TTC1705
 
Deinococcus deserti VCD115
 
Deinococcus geothermalis DSM 11300
 
Deinococcus radiodurans R1
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4749: Hypothetical protein
 
Thermus thermophilus HB27

Gene: TTC1705: Hypothetical protein
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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