Regulog ArgR - Deinococcus-Thermus

Properties
Regulator type:	Transcription factor
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine biosynthesis
Effector:	Arginine
Phylum:	Deinococcus-Thermus
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By trascription factor - ArgR
By taxonomy - Deinococcus-Thermus
By TF family - ArgR
By effector - Arginine
By pathway - Arginine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Deinococcus deserti VCD115	14	3
Deinococcus geothermalis DSM 11300	9	2
Deinococcus radiodurans R1	14	2
Thermus aquaticus Y51MC23	12	3
Thermus thermophilus HB27	11	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
carB	* Deinococcus deserti VCD115 Site: position = -62 score = 4.63001 sequence = TGCATAACCATACA Gene: Deide_00700: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	* Deinococcus geothermalis DSM 11300 Site: position = -64 score = 4.55013 sequence = TGCATAACCTTGCA Gene: Dgeo_2070: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Deinococcus radiodurans R1 Gene: DR0668: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	* Thermus aquaticus Y51MC23 Site: position = -68 score = 4.38878 sequence = CGCATACCTTTGCC Gene: TaqDRAFT_5409: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	* Thermus thermophilus HB27 Site: position = -69 score = 4.439 sequence = TGCATATTTATGCC Gene: TTC0247: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

CRON 2.
argF	* Deinococcus deserti VCD115 Site: position = -166 score = 4.29904 sequence = TGCATACTTACACA Gene: Deide_07060: Ornithine carbamoyltransferase (EC 2.1.3.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1605: Ornithine carbamoyltransferase (EC 2.1.3.3)	* Deinococcus radiodurans R1 Site: position = -31 score = 4.18611 sequence = CGCATAACTTTGAG Gene: DR0080: Ornithine carbamoyltransferase (EC 2.1.3.3)	* Thermus aquaticus Y51MC23 Site: position = -38 score = 4.7624 sequence = TGCATAAGTTTGCA Site: position = -147 score = 4.43219 sequence = CGCAAAGCCATGCG Gene: TaqDRAFT_3560: Ornithine carbamoyltransferase (EC 2.1.3.3)	* Thermus thermophilus HB27 Site: position = -148 score = 4.05884 sequence = CGCAAGGCCATGCG Site: position = -38 score = 4.66534 sequence = TGCATAAGTTTGCG Gene: TTC0838: Ornithine carbamoyltransferase (EC 2.1.3.3)	Ornithine carbamoyltransferase (EC 2.1.3.3)
COG4636	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3559: Conserved hypothetical protein, DUF820	Thermus thermophilus HB27 Gene: TTC0837: Conserved hypothetical protein, DUF820	Conserved hypothetical protein, DUF820
argC	Deinococcus deserti VCD115 Gene: Deide_07080: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1604: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Deinococcus radiodurans R1 Gene: DR0078: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3558: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Thermus thermophilus HB27 Gene: TTC0836: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ	Deinococcus deserti VCD115 Gene: Deide_10200: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0742: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Deinococcus radiodurans R1 Gene: DR1704: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3557: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Thermus thermophilus HB27 Gene: TTC0835: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
yfcD	Deinococcus deserti VCD115 Gene: Deide_07070: Putative NUDIX hydrolase	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1 Gene: DR0079: Putative NUDIX hydrolase	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Putative NUDIX hydrolase

CRON 3.
argG	* Deinococcus deserti VCD115 Site: position = -155 score = 4.98248 sequence = TGTATAGCTATGCG Site: position = -134 score = 4.06331 sequence = CGCATAACCATTCA Gene: Deide_00720: Argininosuccinate synthase (EC 6.3.4.5)	* Deinococcus geothermalis DSM 11300 Site: position = -163 score = 4.98248 sequence = TGCATAGCTATACG Site: position = -142 score = 4.02068 sequence = CGTATAACGATACA Gene: Dgeo_2067: Argininosuccinate synthase (EC 6.3.4.5)	* Deinococcus radiodurans R1 Site: position = -155 score = 5.1718 sequence = TGCATAGCTATGCG Site: position = -135 score = 4.16037 sequence = TGCATAGTCATTCA Gene: DR0674: Argininosuccinate synthase (EC 6.3.4.5)	* Thermus aquaticus Y51MC23 Site: position = -44 score = 4.65297 sequence = TGTATACTTATACA Gene: TaqDRAFT_4745: Argininosuccinate synthase (EC 6.3.4.5)	* Thermus thermophilus HB27 Site: position = -46 score = 4.84229 sequence = TGTATACTTATGCA Gene: TTC1701: Argininosuccinate synthase (EC 6.3.4.5)	Argininosuccinate synthase (EC 6.3.4.5)
PF04978	Deinococcus deserti VCD115 Gene: Deide_00730: Conserved hypothetical protein	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1 Gene: DR0675: Conserved hypothetical protein	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Conserved hypothetical protein
COG3153	2 Deinococcus deserti VCD115 Gene: Deide_00740: Putative N-acetyltransferase Gene: Deide_00750: Putative N-acetyltransferase	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2066: Putative N-acetyltransferase	2 Deinococcus radiodurans R1 Gene: DR0676: Putative N-acetyltransferase Gene: DR0677: Putative N-acetyltransferase	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Putative N-acetyltransferase
argH	Deinococcus deserti VCD115 Gene: Deide_00760: Argininosuccinate lyase (EC 4.3.2.1)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2065: Argininosuccinate lyase (EC 4.3.2.1)	Deinococcus radiodurans R1 Gene: DR0678: Argininosuccinate lyase (EC 4.3.2.1)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4746: Argininosuccinate lyase (EC 4.3.2.1)	Thermus thermophilus HB27 Gene: TTC1702: Argininosuccinate lyase (EC 4.3.2.1)	Argininosuccinate lyase (EC 4.3.2.1)
COG1669	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	2 Deinococcus radiodurans R1 Gene: DR0679: Predicted nucleotidyltransferase Gene: DR0680: Predicted nucleotidyltransferase	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Predicted nucleotidyltransferase
argA	3 Deinococcus deserti VCD115 Gene: Deide_00770: N-acetylglutamate synthase (EC 2.3.1.1) Gene: Deide_00780: N-acetylglutamate synthase (EC 2.3.1.1) Gene: Deide_00790: N-acetylglutamate synthase (EC 2.3.1.1)	3 Deinococcus geothermalis DSM 11300 Gene: Dgeo_2063: N-acetylglutamate synthase (EC 2.3.1.1) Gene: Dgeo_2062: N-acetylglutamate synthase (EC 2.3.1.1) Gene: Dgeo_2061: N-acetylglutamate synthase (EC 2.3.1.1)	3 Deinococcus radiodurans R1 Gene: DR0681: N-acetylglutamate synthase (EC 2.3.1.1) Gene: DR0682: N-acetylglutamate synthase (EC 2.3.1.1) Gene: DR0683: N-acetylglutamate synthase (EC 2.3.1.1)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4747: N-acetylglutamate synthase (EC 2.3.1.1)	Thermus thermophilus HB27 Gene: TTC1703: N-acetylglutamate synthase (EC 2.3.1.1)	N-acetylglutamate synthase (EC 2.3.1.1)
carA	Deinococcus deserti VCD115 Gene: Deide_00810: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2060: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)	Deinococcus radiodurans R1 Gene: DR0684: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)	2 Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4751: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain) Gene: TaqDRAFT_4750: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)	Thermus thermophilus HB27 Gene: TTC1706: putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)	putative Carbamoyl-phosphate synthase small chain,(Carbamoyl- phosphate synthetase glutamine chain)
Deide_00800	Deinococcus deserti VCD115 Gene: Deide_00800: Hypothetical protein	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Hypothetical protein
PF01230	Deinococcus deserti VCD115 Gene: Deide_12650: Histidine triad (HIT) protein	Deinococcus geothermalis DSM 11300 Gene: Dgeo_2064: Histidine triad (HIT) protein	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	Histidine triad (HIT) protein
TTC1704	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4748: Hypothetical protein, UPF0150	Thermus thermophilus HB27 Gene: TTC1704: Hypothetical protein, UPF0150	Hypothetical protein, UPF0150
TTC1705	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4749: Hypothetical protein	Thermus thermophilus HB27 Gene: TTC1705: Hypothetical protein	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ArgR - Deinococcus-Thermus

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --