Regulog LexA - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Micrococcineae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 10 | 5 |
| Arthrobacter chlorophenolicus A6 | 10 | 5 |
| Arthrobacter sp. FB24 | 10 | 5 |
| Beutenbergia cavernae DSM 12333 | 7 | 4 |
| Brachybacterium faecium DSM 4810 | 9 | 5 |
| Brevibacterium linens BL2 | 7 | 4 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 4 | 4 |
| Janibacter sp. HTCC2649 | 6 | 3 |
| Jonesia denitrificans DSM 20603 | 8 | 4 |
| Kocuria rhizophila DC2201 | 4 | 3 |
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | 5 | 4 |
| Renibacterium salmoninarum ATCC 33209 | 8 | 4 |
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| lexA |
*
Arthrobacter aurescens TC1 Site: position = -149 score = 5.02795 sequence = TAGAACAAATGTTTGA Site: position = -216 score = 5.48893 sequence = TAGAACACATATTCGA Gene: AAur_1602: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Arthrobacter chlorophenolicus A6 Site: position = -221 score = 5.69239 sequence = TAGAACACATGTTCGA Site: position = -153 score = 5.02795 sequence = TAGAACAAATGTTTGA Gene: Achl_1470: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Arthrobacter sp. FB24 Site: position = -40 score = 5.02795 sequence = TAGAACAAATGTTTGA Site: position = -107 score = 5.48893 sequence = TAGAACACATATTCGA Gene: Arth_1468: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: Bcav_2433: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Brachybacterium faecium DSM 4810 Site: position = -167 score = 4.94237 sequence = CCGAACTCCTGTTCGA Site: position = -98 score = 5.05455 sequence = TCGAACACCTGTTTGG Gene: Bfae_10620: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Brevibacterium linens BL2 Site: position = -142 score = 4.99265 sequence = TCGAACATTTATGCGA Site: position = -193 score = 4.89169 sequence = TAGAACGTCTGTTCTA Gene: BlinB01003436: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -229 score = 5.22354 sequence = CCGAACATACATTCGA Site: position = -156 score = 4.86254 sequence = TCGAACAGGTGTTTGC Gene: CMM_2018: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Janibacter sp. HTCC2649 Site: position = -103 score = 5.50187 sequence = TCGAACAGATGTTTGA Site: position = -172 score = 5.02537 sequence = TCGAAACGGTGTTCGA Gene: JNB_00180: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Jonesia denitrificans DSM 20603 Site: position = -251 score = 5.23499 sequence = TCGAACATACGTTCGT Site: position = -182 score = 5.43175 sequence = TCGAACAGGTGTTTGA Gene: Jden_1054: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Kocuria rhizophila DC2201 Site: position = -155 score = 5.40682 sequence = TCGAACACATATTTGA Site: position = -222 score = 5.40233 sequence = TAGAACACATCTTCGA Gene: KRH_15760: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: Ksed_17230: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -198 score = 4.6975 sequence = CCGAATTTATCTTCGA Site: position = -123 score = 5.04106 sequence = TCGAACACATGTTTGT Gene: Lxx15880: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Renibacterium salmoninarum ATCC 33209 Site: position = -52 score = 5.10994 sequence = TAGAACATATATTTGA Site: position = -118 score = 5.35431 sequence = TAGAACATGTTTTCGA Gene: RSal33209_0733: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 2. | |||||||||||||||
| recA |
*
Arthrobacter aurescens TC1 Site: position = -204 score = 5.37033 sequence = TCGAATATCTGTTCGG Gene: AAur_1594: Recombinase A |
*
Arthrobacter chlorophenolicus A6 Site: position = -156 score = 5.30021 sequence = TCGAATACCTGTTCGG Gene: Achl_1462: Recombinase A |
*
Arthrobacter sp. FB24 Site: position = -158 score = 5.37033 sequence = TCGAATATCTGTTCGG Gene: Arth_1460: Recombinase A |
*
Beutenbergia cavernae DSM 12333 Site: position = -185 score = 5.09476 sequence = TCGAACACGCGTTCGC Gene: Bcav_2448: Recombinase A |
*
Brachybacterium faecium DSM 4810 Site: position = -186 score = 5.24848 sequence = TCGAACGTCTGTTCGG Gene: Bfae_10530: Recombinase A |
Gene: BlinB01003445: Recombinase A |
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -213 score = 5.13217 sequence = TCGAATATCCCTTCGA Gene: CMM_2025: Recombinase A |
*
Janibacter sp. HTCC2649 Site: position = -194 score = 5.42006 sequence = TCGAACACGTGTTCGT Gene: JNB_05200: Recombinase A |
*
Jonesia denitrificans DSM 20603 Site: position = -208 score = 5.68218 sequence = TCGAACATGTGTTCGG Gene: Jden_1041: Recombinase A |
*
Kocuria rhizophila DC2201 Site: position = -180 score = 5.31069 sequence = TCGAAGGTATATTCGA Gene: KRH_15840: Recombinase A |
Gene: Ksed_17690: Recombinase A |
*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -93 score = 5.46225 sequence = TCGAAGATATGTTCGG Gene: Lxx16030: Recombinase A |
*
Renibacterium salmoninarum ATCC 33209 Site: position = -116 score = 5.37033 sequence = TCGAATATCTGTTCGG Gene: RSal33209_0722: Recombinase A |
Gene: TW611: Recombinase A |
Recombinase A |
| recX |
Gene: AAur_1595: Regulatory protein RecX |
Gene: Achl_1463: Regulatory protein RecX |
Gene: Arth_1461: Regulatory protein RecX |
Gene: Bcav_2447: Regulatory protein RecX |
Gene: Bfae_10540: Regulatory protein RecX |
Gene: BlinB01003444: Regulatory protein RecX |
Gene: CMM_2024: Regulatory protein RecX |
Gene: JNB_05195: Regulatory protein RecX |
Gene: Jden_1042: Regulatory protein RecX |
Gene: KRH_15830: Regulatory protein RecX |
Gene: Ksed_17680: Regulatory protein RecX |
Gene: Lxx16000: Regulatory protein RecX |
Gene: RSal33209_0723: Regulatory protein RecX |
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Regulatory protein RecX |
| CRON 3. | |||||||||||||||
| splB |
*
Arthrobacter aurescens TC1 Site: position = 11 score = 5.60075 sequence = TCGAACATACATTCGA Gene: AAur_1619: DNA repair photolyase |
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Arthrobacter chlorophenolicus A6 Site: position = -24 score = 5.72131 sequence = TCGAACATGTTTTCGA Gene: Achl_1488: DNA repair photolyase |
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Arthrobacter sp. FB24 Site: position = -25 score = 5.51415 sequence = TCGAACATACCTTCGA Gene: Arth_1485: DNA repair photolyase |
*
Beutenbergia cavernae DSM 12333 Site: position = -24 score = 5.016 sequence = TCGGACGCGTGTTCGA Gene: Bcav_2004: DNA repair photolyase |
*
Brachybacterium faecium DSM 4810 Site: position = -24 score = 5.66397 sequence = TCGAACACGCGTTCGA Gene: Bfae_28900: DNA repair photolyase |
*
Brevibacterium linens BL2 Site: position = -24 score = 5.98927 sequence = TCGAACACGTGTTCGA Gene: BlinB01001502: DNA repair photolyase |
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -24 score = 4.96142 sequence = GCGAATGTGTGTTCGA Gene: CMM_0905: DNA repair photolyase |
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*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -24 score = 5.76251 sequence = TAGAACATATGTTCGA Gene: Lxx03480: DNA repair photolyase |
2
Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0753: DNA repair photolyase Gene: RSal33209_0754: DNA repair photolyase |
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DNA repair photolyase |
| CRON 4. | |||||||||||||||
| uvrA |
*
Arthrobacter aurescens TC1 Site: position = -29 score = 5.14582 sequence = TCGAAGAAGTTTTCGA Gene: AAur_2080: Excinuclease ABC, subunit A |
*
Arthrobacter chlorophenolicus A6 Site: position = -29 score = 5.21594 sequence = TCGAAGAAATTTTCGA Gene: Achl_1820: Excinuclease ABC, subunit A |
*
Arthrobacter sp. FB24 Site: position = -29 score = 5.14582 sequence = TCGAAGAAGTTTTCGA Gene: Arth_2079: Excinuclease ABC, subunit A |
*
Beutenbergia cavernae DSM 12333 Site: position = -8 score = 5.2329 sequence = TCGAACAGGTGTGCGA Gene: Bcav_2178: Excinuclease ABC, subunit A |
*
Brachybacterium faecium DSM 4810 Site: position = -44 score = 5.39526 sequence = CCGAACAGCTGTTCGA Gene: Bfae_15150: Excinuclease ABC, subunit A |
Gene: BlinB01000097: Excinuclease ABC, subunit A |
Gene: CMM_1749: Excinuclease ABC, subunit A |
Gene: JNB_03565: Excinuclease ABC, subunit A |
*
Jonesia denitrificans DSM 20603 Site: position = -45 score = 5.30302 sequence = TCGAACATCTGTGCGA Gene: Jden_1251: Excinuclease ABC, subunit A |
Gene: KRH_12030: Excinuclease ABC, subunit A |
Gene: Ksed_13060: Excinuclease ABC, subunit A |
*
Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -21 score = 4.99272 sequence = TCGAACAAAACTTCGA Gene: Lxx11470: Excinuclease ABC, subunit A |
*
Renibacterium salmoninarum ATCC 33209 Site: position = -30 score = 5.43126 sequence = TCGAAGACATTTTCGA Gene: RSal33209_2279: Excinuclease ABC, subunit A |
Gene: TW296: Excinuclease ABC, subunit A |
Excinuclease ABC, subunit A |
| PF00702 |
Gene: AAur_2081: Putative phosphatase, HAD family |
Gene: Achl_1821: Putative phosphatase, HAD family |
Gene: Arth_2080: Putative phosphatase, HAD family |
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Gene: KRH_12040: Putative phosphatase, HAD family |
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Gene: RSal33209_2278: Putative phosphatase, HAD family |
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Putative phosphatase, HAD family |
| PF01553 |
Gene: AAur_2082: Putative acyltransferase |
Gene: Achl_1822: Putative acyltransferase |
Gene: Arth_2081: Putative acyltransferase |
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Gene: KRH_12050: Putative acyltransferase |
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Gene: RSal33209_2277: Putative acyltransferase |
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Putative acyltransferase |
| uvrC |
Gene: AAur_2083: Excinuclease ABC, subunit C |
Gene: Achl_1823: Excinuclease ABC, subunit C |
Gene: Arth_2082: Excinuclease ABC, subunit C |
Gene: Bcav_2175: Excinuclease ABC, subunit C |
Gene: Bfae_15160: Excinuclease ABC, subunit C |
Gene: BlinB01000096: Excinuclease ABC, subunit C |
Gene: CMM_1748: Excinuclease ABC, subunit C |
Gene: JNB_03530: Excinuclease ABC, subunit C |
Gene: Jden_1252: Excinuclease ABC, subunit C |
Gene: KRH_12060: Excinuclease ABC, subunit C |
Gene: Ksed_13070: Excinuclease ABC, subunit C |
Gene: Lxx11480: Excinuclease ABC, subunit C |
Gene: RSal33209_2276: Excinuclease ABC, subunit C |
Gene: TW297: Excinuclease ABC, subunit C |
Excinuclease ABC, subunit C |
| CRON 5. | |||||||||||||||
| imuA |
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*
Beutenbergia cavernae DSM 12333 Site: position = -53 score = 5.66555 sequence = TCGAACAACTGTTCGA Gene: Bcav_2289: Predicted RecA/RadA recombinase |
*
Brachybacterium faecium DSM 4810 Site: position = -60 score = 5.36345 sequence = TCGAACCCCTGTTCGA Site: position = -123 score = 4.88266 sequence = TCGCATGCATGTTCGA Gene: Bfae_15760: Predicted RecA/RadA recombinase |
*
Brevibacterium linens BL2 Site: position = -18 score = 4.84566 sequence = TAGAACACTAGTTCGA Gene: BlinB01000045: Predicted RecA/RadA recombinase |
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*
Jonesia denitrificans DSM 20603 Site: position = -76 score = 5.73409 sequence = TCGAACACACGTTCGA Gene: Jden_1185: Predicted RecA/RadA recombinase |
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Predicted RecA/RadA recombinase |
| imuB |
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Gene: Bcav_2288: DNA polymerase-like protein PA0670 |
Gene: Bfae_15750: DNA polymerase-like protein PA0670 |
Gene: BlinB01000044: DNA polymerase-like protein PA0670 |
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Gene: Jden_1186: DNA polymerase-like protein PA0670 |
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DNA polymerase-like protein PA0670 |
| dnaE2 |
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Gene: Bcav_2287: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Bfae_15740: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: BlinB01000043: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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Gene: Jden_1187: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 6. | |||||||||||||||
| Achl_2045 |
*
Arthrobacter aurescens TC1 Site: position = -40 score = 5.46613 sequence = TCGAACATACTTTCGA Gene: AAur_2311: Conserved hypothetical protein |
*
Arthrobacter chlorophenolicus A6 Site: position = -59 score = 5.85593 sequence = TCGAACACATATTCGA Gene: Achl_2045: Conserved hypothetical protein |
*
Arthrobacter sp. FB24 Site: position = -108 score = 5.636 sequence = TCGAAGATATATTCGA Gene: Arth_2319: Conserved hypothetical protein |
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*
Brevibacterium linens BL2 Site: position = -33 score = 5.84407 sequence = TCGAACATTTGTTCGA Gene: BlinB01003614: Conserved hypothetical protein |
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*
Janibacter sp. HTCC2649 Site: position = -80 score = 5.95099 sequence = TCGAACAGATGTTCGA Gene: JNB_01670: Conserved hypothetical protein |
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Gene: Ksed_16060: Conserved hypothetical protein |
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*
Renibacterium salmoninarum ATCC 33209 Site: position = -101 score = 5.7226 sequence = TCGAATATATATTCGA Gene: RSal33209_3492: Conserved hypothetical protein |
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Conserved hypothetical protein |
| JNB_01675 |
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Gene: JNB_01675: Conserved hypothetical protein |
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Gene: Ksed_16050: Conserved hypothetical protein |
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Conserved hypothetical protein |
| dnaE |
Gene: AAur_2310: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Achl_2044: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Arth_2318: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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Gene: BlinB01003613: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -62 score = 5.62568 sequence = TCGAACATCCGTTCGA Gene: CMM_1518: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: JNB_01680: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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*
Kocuria rhizophila DC2201 Site: position = -24 score = 5.20389 sequence = TCGAACACAGTTTCGA Gene: KRH_11560: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Ksed_16040: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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DNA polymerase III alpha subunit (EC 2.7.7.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |