Regulog Bamb_6386 - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 3 | 2 |
| Burkholderia glumae BGR1 | 2 | 1 |
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia phymatum STM815 | 8 | 4 |
| Burkholderia pseudomallei K96243 | ||
| Burkholderia sp. 383 | ||
| Burkholderia vietnamiensis G4 | ||
| Burkholderia xenovorans LB400 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF01966 |
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Burkholderia cepacia AMMD Site: position = -143 score = 6.41876 sequence = CGATGGTGCA-(14)-TCTTGGGACT Gene: Bamb_6387: Metal-dependent phosphohydrolase, HD subdomain |
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*2
Burkholderia phymatum STM815 Site: position = -114 score = 5.7837 sequence = CCCAGGTGCA-(14)-TTCCGGCGCG Site: position = -176 score = 6.69445 sequence = CGATAGTACA-(14)-TCTTGGGCCT Gene: Bphy_6986: Metal-dependent phosphohydrolase, HD subdomain Site: position = -175 score = 6.94182 sequence = CGATAGTACA-(14)-TCTTGGGTCT Gene: Bphy_3551: Metal-dependent phosphohydrolase, HD subdomain |
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Gene: Bcep18194_A4971: Metal-dependent phosphohydrolase, HD subdomain |
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Metal-dependent phosphohydrolase, HD subdomain |
| COG1028 |
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2
Burkholderia phymatum STM815 Gene: Bphy_6985: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Gene: Bphy_3550: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
| CRON 2. | |||||||||
| COG1917 |
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Burkholderia cepacia AMMD Site: position = -89 score = 10.3266 sequence = TCTTGGTACA-(14)-TCCTGGTGCT Gene: Bamb_6385: Uncharacterized conserved protein, contains double-stranded beta-helix domain |
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Burkholderia glumae BGR1 Site: position = -91 score = 8.21482 sequence = CCATGGTACA-(14)-TTTCAGTGCT Gene: bglu_2g19030: Uncharacterized conserved protein, contains double-stranded beta-helix domain |
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*2
Burkholderia phymatum STM815 Site: position = -90 score = 10.3266 sequence = TCTTGGTACA-(14)-TCCTGGTGCT Gene: Bphy_6988: Uncharacterized conserved protein, contains double-stranded beta-helix domain Site: position = -89 score = 10.3266 sequence = TCTTGGTACA-(14)-TCCTGGTGCT Gene: Bphy_3553: Uncharacterized conserved protein, contains double-stranded beta-helix domain |
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Uncharacterized conserved protein, contains double-stranded beta-helix domain |
| COG2128 |
Gene: Bamb_6384: Uncharacterized conserved protein |
Gene: bglu_2g19040: Uncharacterized conserved protein |
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2
Burkholderia phymatum STM815 Gene: Bphy_3554: Uncharacterized conserved protein Gene: Bphy_6989: Uncharacterized conserved protein |
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Uncharacterized conserved protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |