Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ3 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043 1 1
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Cellvibrio japonicus Ueda107
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Marinobacter aqueolei
Marinobacter sp. ELB17
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF07690
 
Alcanivorax borkumensis SK2
*
Chromohalobacter salexigens DSM 3043

Site:
position = -231
score = 9.56249
sequence = TCTGTAAT-(1)-AGTACAAT-(6)-ATTGTACT

Gene: Csal_1089: putative transporter, major facilitator transporter family
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Cellvibrio japonicus Ueda107
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
putative transporter, major facilitator transporter family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD