Regulog PdxQ3 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport; Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 1 | 1 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | 2 | 1 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| COG2050 |
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Delftia acidovorans SPH-1 Site: position = -100 score = 9.72868 sequence = AGTGTAGC-(1)-AGGACAAT-(6)-ATTGTTCC Gene: Daci_2844: Uncharacterized protein, possibly involved in aromatic compounds catabolism |
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Uncharacterized protein, possibly involved in aromatic compounds catabolism |
| CRON 2. | ||||||||||||
| PF01965 |
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Methylibium petroleiphilum PM1 Site: position = -5 score = 12.3302 sequence = GTTGTATG-(1)-ATGACAAT-(6)-ATTGTATT Gene: Mpe_A2040: ThiJ/PfpI domain-containing protein |
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ThiJ/PfpI domain-containing protein |
| pdxO2 |
Gene: Aave_4171: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Ajs_2440: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: CtesDRAFT_1041: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Daci_2223: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Leptothrix cholodnii SP-6 Gene: Lcho_4337: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding Gene: Lcho_0027: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Mpe_A2039: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Pnap_3744: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Gene: Rfer_3387: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Vapar_6076: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |