Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ3 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 1 1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1 2 1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2050
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -100
score = 9.72868
sequence = AGTGTAGC-(1)-AGGACAAT-(6)-ATTGTTCC

Gene: Daci_2844: Uncharacterized protein, possibly involved in aromatic compounds catabolism
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Uncharacterized protein, possibly involved in aromatic compounds catabolism
 
CRON 2.
PF01965
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
*
Methylibium petroleiphilum PM1

Site:
position = -5
score = 12.3302
sequence = GTTGTATG-(1)-ATGACAAT-(6)-ATTGTATT

Gene: Mpe_A2040: ThiJ/PfpI domain-containing protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
ThiJ/PfpI domain-containing protein
pdxO2
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4171: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Acidovorax sp. JS42

Gene: Ajs_2440: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_1041: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Delftia acidovorans SPH-1

Gene: Daci_2223: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 2
Leptothrix cholodnii SP-6

Gene: Lcho_4337: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Gene: Lcho_0027: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2039: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3744: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3387: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Variovorax paradoxus S110

Gene: Vapar_6076: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Verminephrobacter eiseniae EF01-2
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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