Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxQ3 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5 2 2
Pseudomonas mendocina ymp 1 1
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
 
Azotobacter vinelandii AvOP

Gene: Avin_48150: Permease of the drug/metabolite transporter (DMT) superfamily
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
*
Pseudomonas fluorescens Pf-5

Site:
position = -104
score = 12.6589
sequence = GCTGTATC-(1)-ATGACAAT-(6)-ATTGTGCT

Gene: PFL_2405: Permease of the drug/metabolite transporter (DMT) superfamily
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP2949: Permease of the drug/metabolite transporter (DMT) superfamily
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 2.
PF01810
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
*
Pseudomonas fluorescens Pf-5

Site:
position = -75
score = 10.2828
sequence = TGTGTATC-(1)-AGAACACT-(6)-TTTGTATC

Gene: PFL_4111: Lysine-type exporter protein (LYSE/YGGA)
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Lysine-type exporter protein (LYSE/YGGA)
 
CRON 3.
Pmen_1515
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -81
score = 13.1986
sequence = GTTGTATC-(1)-ATGACAAT-(6)-ATTGTCAT

Gene: Pmen_1515: ThiJ/PfpI family protein
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
ThiJ/PfpI family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD