Regulog PdxQ3 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Metabolite transport; Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
- By pathway - Metabolite transport
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | 2 | 2 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF00892 |
Gene: Avin_48150: Permease of the drug/metabolite transporter (DMT) superfamily |
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Pseudomonas fluorescens Pf-5 Site: position = -104 score = 12.6589 sequence = GCTGTATC-(1)-ATGACAAT-(6)-ATTGTGCT Gene: PFL_2405: Permease of the drug/metabolite transporter (DMT) superfamily |
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Gene: PP2949: Permease of the drug/metabolite transporter (DMT) superfamily |
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Permease of the drug/metabolite transporter (DMT) superfamily |
| CRON 2. | |||||||||
| PF01810 |
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Pseudomonas fluorescens Pf-5 Site: position = -75 score = 10.2828 sequence = TGTGTATC-(1)-AGAACACT-(6)-TTTGTATC Gene: PFL_4111: Lysine-type exporter protein (LYSE/YGGA) |
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Lysine-type exporter protein (LYSE/YGGA) |
| CRON 3. | |||||||||
| Pmen_1515 |
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Pseudomonas mendocina ymp Site: position = -81 score = 13.1986 sequence = GTTGTATC-(1)-ATGACAAT-(6)-ATTGTCAT Gene: Pmen_1515: ThiJ/PfpI family protein |
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ThiJ/PfpI family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |