Regulog PdxQ3 - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/MocR
By pathway - Metabolite transport
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5	2	2
Pseudomonas mendocina ymp	1	1
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF00892	Azotobacter vinelandii AvOP Gene: Avin_48150: Permease of the drug/metabolite transporter (DMT) superfamily	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas fluorescens Pf-5 Site: position = -104 score = 12.6589 sequence = GCTGTATC-(1)-ATGACAAT-(6)-ATTGTGCT Gene: PFL_2405: Permease of the drug/metabolite transporter (DMT) superfamily	Pseudomonas mendocina ymp	Pseudomonas putida KT2440 Gene: PP2949: Permease of the drug/metabolite transporter (DMT) superfamily	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Permease of the drug/metabolite transporter (DMT) superfamily

CRON 2.
PF01810	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas fluorescens Pf-5 Site: position = -75 score = 10.2828 sequence = TGTGTATC-(1)-AGAACACT-(6)-TTTGTATC Gene: PFL_4111: Lysine-type exporter protein (LYSE/YGGA)	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Lysine-type exporter protein (LYSE/YGGA)

CRON 3.
Pmen_1515	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -81 score = 13.1986 sequence = GTTGTATC-(1)-ATGACAAT-(6)-ATTGTCAT Gene: Pmen_1515: ThiJ/PfpI family protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	ThiJ/PfpI family protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxQ3 - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --