Regulog LexA - Planctomycetes
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Planctomycetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Planctomycetes
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Blastopirellula marina DSM 3645 | 3 | 3 |
| Gemmata obscuriglobus UQM 2246 | 1 | 1 |
| Pirellula sp. 1 | 2 | 2 |
| Pirellula staleyi DSM 6068 | 1 | 1 |
| Planctomyces maris DSM 8797 | 2 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| recO |
*
Blastopirellula marina DSM 3645 Site: position = -157 score = 4.47375 sequence = TTCGACGTGATGTCGGG Gene: DSM3645_07700: DNA recombination and repair protein RecO |
Gene: GobsU_010100031169: DNA recombination and repair protein RecO |
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Gene: Psta_1748: DNA recombination and repair protein RecO |
Gene: PM8797T_14219: DNA recombination and repair protein RecO |
DNA recombination and repair protein RecO |
| CRON 2. | ||||||
| recA |
*
Blastopirellula marina DSM 3645 Site: position = -196 score = 4.38545 sequence = CGCGAAAAAATTTTGGG Gene: DSM3645_17620: Recombinase A |
Gene: GobsU_010100027671: Recombinase A |
*
Pirellula sp. 1 Site: position = -178 score = 4.37292 sequence = GCCGAACTCACTTCGGT Gene: RB11863: Recombinase A |
Gene: Psta_3796: Recombinase A |
*
Planctomyces maris DSM 8797 Site: position = -47 score = 5.37679 sequence = CTCGAACTCATTGCGGG Gene: PM8797T_17684: Recombinase A |
Recombinase A |
| CRON 3. | ||||||
| dnaX |
Gene: DSM3645_28667: DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
Gene: GobsU_010100014157: DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
*
Pirellula sp. 1 Site: position = -149 score = 5.36327 sequence = CTCAAACTGAGTTCGGG Gene: RB6494: DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
*
Pirellula staleyi DSM 6068 Site: position = -6 score = 4.31 sequence = CTCGTCATGAGTGCGTG Gene: Psta_2525: DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
Gene: PM8797T_30526: DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) |
| CRON 4. | ||||||
| hsdR |
*
Blastopirellula marina DSM 3645 Site: position = -62 score = 5.109 sequence = CCCAAACTCCTTTCGGG Gene: DSM3645_05635: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) |
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Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) |
| CRON 5. | ||||||
| lexA |
Gene: DSM3645_18051: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Gemmata obscuriglobus UQM 2246 Site: position = -134 score = 3.99963 sequence = CGCGAAATGCTATCGCG Gene: GobsU_010100039258: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: RB7437: SOS-response repressor and protease LexA (EC 3.4.21.88) |
Gene: Psta_0492: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*2
Planctomyces maris DSM 8797 Site: position = -101 score = 3.73622 sequence = CCCAAAATGTTTTTTTG Gene: PM8797T_01334: SOS-response repressor and protease LexA (EC 3.4.21.88) Gene: PM8797T_16700: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |