Regulog FdsR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | ModE |
| Regulation mode: | repressor (activator) |
| Biological process: | Formate oxydation |
| Effector: | Formate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - ModE
- By effector - Formate
- By pathway - Formate oxydation
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia vietnamiensis G4 | 5 | 2 |
| Burkholderia cepacia AMMD | 5 | 2 |
| Burkholderia glumae BGR1 | 5 | 2 |
| Burkholderia mallei ATCC 23344 | 5 | 2 |
| Burkholderia phymatum STM815 | 5 | 2 |
| Burkholderia pseudomallei K96243 | 5 | 2 |
| Burkholderia sp. 383 | 5 | 2 |
| Burkholderia xenovorans LB400 | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| fdsR |
*
Burkholderia vietnamiensis G4 Site: position = -108 score = 4.69262 sequence = ATATGTGCCGGTAATTCATAT Site: position = -21 score = 5.7341 sequence = ATAGGAAATCGGAGTACATAA Gene: Bcep1808_0955: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia cepacia AMMD Site: position = -108 score = 5.32511 sequence = ATATGCGCTAGGAATGCATAT Site: position = -21 score = 6.03004 sequence = ATAGGAAATCGGAGTGCATAA Gene: Bamb_0898: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia glumae BGR1 Site: position = -21 score = 5.26405 sequence = ATAAGAAATGAGGTTGCATAA Gene: bglu_1g08610: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia mallei ATCC 23344 Site: position = -93 score = 5.7021 sequence = ATAGGAAACGGAATTGCATAA Site: position = -179 score = 4.74804 sequence = ATATGCGCTTATGATTCATAT Gene: BMA0446: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia phymatum STM815 Site: position = -21 score = 4.96896 sequence = ATAGGAACTACAACAGCATAT Site: position = -111 score = 5.25112 sequence = ATATGCACTTGTTATTCATAA Gene: Bphy_0730: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia pseudomallei K96243 Site: position = -21 score = 5.7021 sequence = ATAGGAAACGGAATTGCATAA Site: position = -107 score = 4.74804 sequence = ATATGCGCTTATGATTCATAT Gene: BPSL2527: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia sp. 383 Site: position = -108 score = 5.18137 sequence = ATATGCGCTCGAGATTCATAT Site: position = -21 score = 6.03004 sequence = ATAGGAAATCGGAGTGCATAA Gene: Bcep18194_A4147: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Burkholderia xenovorans LB400 Site: position = -112 score = 5.32569 sequence = ATATGCACTTGTCATTCATAA Gene: Bxe_A0967: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
Formate dehydrogenase transcriptional regulator FdsR, ModE family |
| CRON 2. | |||||||||
| fdsG |
*
Burkholderia vietnamiensis G4 Site: position = -131 score = 5.7341 sequence = TTATGTACTCCGATTTCCTAT Site: position = -44 score = 4.69262 sequence = ATATGAATTACCGGCACATAT Gene: Bcep1808_0954: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia cepacia AMMD Site: position = -44 score = 5.32511 sequence = ATATGCATTCCTAGCGCATAT Site: position = -131 score = 6.03004 sequence = TTATGCACTCCGATTTCCTAT Gene: Bamb_0897: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia glumae BGR1 Site: position = -127 score = 5.26405 sequence = TTATGCAACCTCATTTCTTAT Gene: bglu_1g08600: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia mallei ATCC 23344 Site: position = -44 score = 4.74804 sequence = ATATGAATCATAAGCGCATAT Site: position = -130 score = 5.7021 sequence = TTATGCAATTCCGTTTCCTAT Gene: BMA0448: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia phymatum STM815 Site: position = -134 score = 4.96896 sequence = ATATGCTGTTGTAGTTCCTAT Site: position = -44 score = 5.25112 sequence = TTATGAATAACAAGTGCATAT Gene: Bphy_0729: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia pseudomallei K96243 Site: position = -88 score = 5.7021 sequence = TTATGCAATTCCGTTTCCTAT Gene: BPSL2528: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia sp. 383 Site: position = -131 score = 6.03004 sequence = TTATGCACTCCGATTTCCTAT Site: position = -44 score = 5.18137 sequence = ATATGAATCTCGAGCGCATAT Gene: Bcep18194_A4146: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Burkholderia xenovorans LB400 Site: position = -43 score = 5.32569 sequence = TTATGAATGACAAGTGCATAT Gene: Bxe_A0966: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
| fdsB |
Gene: Bcep1808_0953: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Bamb_0896: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: bglu_1g08590: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: BMA0449: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Bphy_0728: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: BPSL2529: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Bcep18194_A4145: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Bxe_A0965: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
| fdsA |
Gene: Bcep1808_0952: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Bamb_0895: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: bglu_1g08580: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: BMA0450: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Bphy_0727: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: BPSL2530: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Bcep18194_A4144: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Bxe_A0964: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
| fdsD |
Gene: Bcep1808_0951: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Bamb_0894: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: bglu_1g08570: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: BMA0451: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Bphy_0726: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: BPSL2531: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Bcep18194_A4143: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Bxe_A0963: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |