Regulog FdsR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | ModE |
| Regulation mode: | repressor (activator) |
| Biological process: | Formate oxydation |
| Effector: | Formate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - ModE
- By effector - Formate
- By pathway - Formate oxydation
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 6 | 2 |
| Ralstonia eutropha H16 | 6 | 2 |
| Ralstonia eutropha JMP134 | 6 | 2 |
| Ralstonia metallidurans CH34 | 6 | 2 |
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fdsR |
*
Cupriavidus taiwanensis Site: position = -104 score = 5.73744 sequence = ATATGCTATTTTTTTCCTAT Site: position = -18 score = 5.58753 sequence = ATAAGCTATTTTCTACATAT Gene: RALTA_A0596: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Ralstonia eutropha H16 Site: position = -105 score = 5.73744 sequence = ATATGCTATTTTTTTCCTAT Site: position = -18 score = 5.58753 sequence = ATAAGCTATTTTCTACATAT Gene: H16_A0639: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Ralstonia eutropha JMP134 Site: position = -18 score = 5.49713 sequence = ATAAGCTATTTTGTTCATAT Site: position = -105 score = 5.73744 sequence = ATATGCTATTTTTTTCCTAT Gene: Reut_A0616: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Ralstonia metallidurans CH34 Site: position = 12 score = 5.67824 sequence = ATATGCTATTTTCCGCATAT Gene: Rmet_0552: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
|
|
Formate dehydrogenase transcriptional regulator FdsR, ModE family |
| CRON 2. | |||||||
| fdsG |
*
Cupriavidus taiwanensis Site: position = -163 score = 5.58753 sequence = ATATGTAGAAAATAGCTTAT Site: position = -77 score = 5.73744 sequence = ATAGGAAAAAAATAGCATAT Gene: RALTA_A0597: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Ralstonia eutropha H16 Site: position = -65 score = 5.73744 sequence = ATAGGAAAAAAATAGCATAT Site: position = -152 score = 5.58753 sequence = ATATGTAGAAAATAGCTTAT Gene: H16_A0640: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Ralstonia eutropha JMP134 Site: position = -149 score = 5.49713 sequence = ATATGAACAAAATAGCTTAT Site: position = -62 score = 5.73744 sequence = ATAGGAAAAAAATAGCATAT Gene: Reut_A0617: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Ralstonia metallidurans CH34 Site: position = -145 score = 5.67824 sequence = ATATGCGGAAAATAGCATAT Gene: Rmet_0553: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
|
|
NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
| fdsB |
Gene: RALTA_A0598: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: H16_A0641: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Reut_A0618: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Rmet_0554: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
2
Ralstonia pickettii 12J Gene: Rpic_4643: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit Gene: Rpic_4392: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
|
NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
| fdsA |
Gene: RALTA_A0599: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: H16_A0642: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Reut_A0619: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Rmet_0555: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
2
Ralstonia pickettii 12J Gene: Rpic_4391: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit Gene: Rpic_4642: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
|
NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
| fdsC |
Gene: RALTA_A0600: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: H16_A0643: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: Reut_A0620: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: Rmet_0556: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
|
|
NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
| fdsD |
Gene: RALTA_A0601: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: H16_A0644: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Reut_A0621: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Rmet_0557: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
|
|
NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |