Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SMb20039 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 1 1
Azorhizobium caulinodans ORS 571 1 1
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 1 1
Bradyrhizobium sp. BTAi1 1 1
Brucella melitensis 16M 1 1
Mesorhizobium loti MAFF303099 1 1
Mesorhizobium sp. BNC1 1 1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 1 1
Rhizobium leguminosarum bv. viciae 3841 1 1
Rhizobium sp. NGR234 1 1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 1 1
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG697
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -106
score = 13.3145
sequence = AACCGTACTGC-(8)-CCATAACAGTT-(6)-TATTGTATCGT

Gene: Atu0234: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Azorhizobium caulinodans ORS 571

Site:
position = -110
score = 10.7729
sequence = AACTGTGTGGT-(8)-TCCATACTGTT-(6)-AACCGTATGGC

Gene: AZC_0293: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -109
score = 12.73
sequence = AGGTGTACTGC-(8)-CCCATACAGTT-(6)-GATTGTACTGG

Gene: bll0403: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Bradyrhizobium sp. BTAi1

Site:
position = -105
score = 12.7909
sequence = AAGTGTATCAC-(8)-CCAGTACAGTT-(6)-GATTGTATTGC

Gene: BBta_7474: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Brucella melitensis 16M

Site:
position = -81
score = 12.201
sequence = ATCTGTACCAC-(8)-CCAGTACAGTT-(6)-AATTGTCTGGA

Gene: BMEI0170: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Mesorhizobium loti MAFF303099

Site:
position = -95
score = 14.2169
sequence = ATCTGTATTGC-(8)-CCATTACAGTT-(6)-AATTGTACCGC

Gene: mll1137: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Mesorhizobium sp. BNC1

Site:
position = -92
score = 12.3226
sequence = TACTGTACTGC-(7)-AGAGAACAGTT-(6)-AATTGTACCGC

Gene: Meso_0254: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -205
score = 13.5676
sequence = ATCTGTATTGC-(8)-CCATAACAGTT-(6)-AATCGTATCAG

Gene: RHE_CH02665: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -113
score = 13.4083
sequence = ATCCGTATTGC-(8)-CCATTACAGTT-(6)-AATCGTATCAG

Gene: RL3117: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
*
Rhizobium sp. NGR234

Site:
position = -119
score = 13.0212
sequence = ATCCGTACCGG-(8)-CCATGACAGTT-(6)-AACTGTACTTC

Gene: NGR_b00110: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -104
score = 12.8693
sequence = ATCCGTACTGG-(8)-CCATGACAGTT-(6)-AACTGTACCTT

Gene: SMb20040: Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
 
Xanthobacter autotrophicus Py2
Permease of the drug/metabolite transporter (DMT) superfamily, COG697(RhaT)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD