Regulog PdxW - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 2 | 2 |
| Burkholderia cepacia AMMD | 2 | 2 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia vietnamiensis G4 | 1 | 1 |
| Burkholderia xenovorans LB400 | 2 | 2 |
| Burkholderia phymatum STM815 | 2 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pdxO |
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Burkholderia pseudomallei K96243 Site: position = -103 score = 11.6405 sequence = CGTGGCTCCAA-(13)-CATGGATCTAT-(2)-ATGGTGCCACA Site: position = -67 score = 8.31019 sequence = CATGGTGCCAC-(13)-TCGAGCTCTTC-(2)-AACGAACATGC Gene: BPSS0727: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Burkholderia mallei ATCC 23344 Site: position = -67 score = 8.31019 sequence = CATGGTGCCAC-(13)-TCGAGCTCTTC-(2)-AACGAACATGC Site: position = -103 score = 11.6405 sequence = CGTGGCTCCAA-(13)-CATGGATCTAT-(2)-ATGGTGCCACA Gene: BMAA1397: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
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Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
| CRON 2. | |||||||||
| PF00583 |
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Burkholderia sp. 383 Site: position = -125 score = 11.3425 sequence = CGTGGCACCAT-(13)-CATGGGCCTAC-(2)-ATGGGGCCTCG Gene: Bcep18194_B2917: GCN5-related N-acetyltransferase |
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Burkholderia cepacia AMMD Site: position = -131 score = 11.1003 sequence = CGTGGCTCCAG-(13)-CATGGGTCTAC-(2)-ATGGTGCCACG Gene: Bamb_5125: GCN5-related N-acetyltransferase |
Gene: bglu_1g32800: GCN5-related N-acetyltransferase |
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Burkholderia xenovorans LB400 Site: position = -98 score = 8.98311 sequence = TGTGGCTCCAG-(13)-GGTGGAGCTAA-(2)-ATGGCGCGACA Gene: Bxe_B0193: GCN5-related N-acetyltransferase |
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Burkholderia phymatum STM815 Site: position = -99 score = 11.7281 sequence = CGTGGCTCCAT-(13)-GGTGGAGCTAA-(2)-ATGGTGCCACA Gene: Bphy_4113: GCN5-related N-acetyltransferase |
GCN5-related N-acetyltransferase |
| CRON 3. | |||||||||
| PF00583 |
Gene: BPSS1459: GCN5-related N-acetyltransferase |
Gene: BMAA0787: GCN5-related N-acetyltransferase |
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Burkholderia sp. 383 Site: position = -68 score = 14.4569 sequence = CGTGGCACCAT-(13)-TCTGGCGCTTC-(2)-ATGGTACCTCG Gene: Bcep18194_B1329: GCN5-related N-acetyltransferase |
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Burkholderia cepacia AMMD Site: position = -68 score = 14.4569 sequence = CGTGGCACCAT-(13)-TCTGGCGCTTC-(2)-ATGGTACCTCG Gene: Bamb_3951: GCN5-related N-acetyltransferase |
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Burkholderia glumae BGR1 Site: position = -94 score = 9.5948 sequence = CGTGGCACCAG-(13)-ACGGGTTCTTC-(2)-TTCGGGCCGCG Gene: bglu_2g15330: GCN5-related N-acetyltransferase |
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Burkholderia vietnamiensis G4 Site: position = -117 score = 14.5943 sequence = CGTGGCACCAT-(13)-TCTGGCGCTTT-(2)-ATGGTACCTCG Gene: Bcep1808_5060: GCN5-related N-acetyltransferase |
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Burkholderia xenovorans LB400 Site: position = -104 score = 11.3807 sequence = GCTGGATCTAT-(13)-GGTGGATCTTT-(2)-AACATACCACG Gene: Bxe_B0245: GCN5-related N-acetyltransferase |
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Burkholderia phymatum STM815 Site: position = -107 score = 10.1116 sequence = GCTGGCTCCAT-(13)-TCTGGTTCTTA-(2)-AGCGCGCGACG Gene: Bphy_4081: GCN5-related N-acetyltransferase |
GCN5-related N-acetyltransferase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |