Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxW - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 1 1
Bordetella bronchiseptica RB50 1 1
Bordetella petrii DSM 12804 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
*
Bordetella avium 197N

Site:
position = -106
score = 12.8555
sequence = CGTGGCACCTA-(13)-TATGGTGCTTT-(2)-ATAATGCCACG

Gene: BAV1624: GCN5-related N-acetyltransferase (GNAT) domain
*
Bordetella bronchiseptica RB50

Site:
position = -118
score = 12.9968
sequence = CATGGCTCTAT-(13)-CGTGGCACTTT-(2)-ATCATGCCACG

Gene: BB2429: GCN5-related N-acetyltransferase (GNAT) domain
*
Bordetella petrii DSM 12804

Site:
position = -107
score = 13.0693
sequence = CATGGCACCAC-(13)-TCTGGTGCTTT-(2)-AGCATGCCACG

Gene: Bpet2920: GCN5-related N-acetyltransferase (GNAT) domain
GCN5-related N-acetyltransferase (GNAT) domain
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD