Regulog PdxW - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 1 | 1 |
| Bordetella bronchiseptica RB50 | 1 | 1 |
| Bordetella petrii DSM 12804 | 1 | 1 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| PF00583 |
*
Bordetella avium 197N Site: position = -106 score = 12.8555 sequence = CGTGGCACCTA-(13)-TATGGTGCTTT-(2)-ATAATGCCACG Gene: BAV1624: GCN5-related N-acetyltransferase (GNAT) domain |
*
Bordetella bronchiseptica RB50 Site: position = -118 score = 12.9968 sequence = CATGGCTCTAT-(13)-CGTGGCACTTT-(2)-ATCATGCCACG Gene: BB2429: GCN5-related N-acetyltransferase (GNAT) domain |
*
Bordetella petrii DSM 12804 Site: position = -107 score = 13.0693 sequence = CATGGCACCAC-(13)-TCTGGTGCTTT-(2)-AGCATGCCACG Gene: Bpet2920: GCN5-related N-acetyltransferase (GNAT) domain |
GCN5-related N-acetyltransferase (GNAT) domain |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |