Regulog PhnR2 - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | 2-aminoethylphosphonate utilization |
| Effector: | 2-aminoethylphosphonate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - PhnR
- By TF family - GntR/Others
- By effector - 2-aminoethylphosphonate
- By pathway - 2-aminoethylphosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 7 | 2 |
| Ralstonia eutropha H16 | 7 | 2 |
| Ralstonia eutropha JMP134 | 10 | 4 |
| Ralstonia metallidurans CH34 | ||
| Ralstonia pickettii 12J | ||
| Ralstonia solanacearum GMI1000 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| phnR2 |
*
Cupriavidus taiwanensis Site: position = -83 score = 5.22113 sequence = ATTGTTGACAAT Gene: RALTA_B1650: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Ralstonia eutropha H16 Site: position = -83 score = 5.22113 sequence = ATTGTTGACAAT Gene: H16_B1949: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Ralstonia eutropha JMP134 Site: position = -81 score = 5.22113 sequence = ATTGTTGACAAT Gene: Reut_B3719: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
|
|
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
| h16_B1948 |
Gene: RALTA_B1649: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: H16_B1948: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: Reut_B3720: Phosphonoacetate hydrolase (EC 3.11.1.2) |
|
|
|
Phosphonoacetate hydrolase (EC 3.11.1.2) |
| h16_B1947 |
Gene: RALTA_B1648: Aldehyde dehydrogenase |
Gene: H16_B1947: Aldehyde dehydrogenase |
Gene: Reut_B3721: Aldehyde dehydrogenase |
|
|
|
Aldehyde dehydrogenase |
| CRON 2. | |||||||
| Reut_B5875 |
|
|
*
Ralstonia eutropha JMP134 Site: position = -45 score = 4.98385 sequence = ACTGTTGACAAT Gene: Reut_B5875: Transcriptional regulator, GntR family |
|
|
|
Transcriptional regulator, GntR family |
| Reut_B5876 |
|
|
Gene: Reut_B5876: Phosphonoacetate hydrolase (EC 3.11.1.2) |
|
|
|
Phosphonoacetate hydrolase (EC 3.11.1.2) |
| CRON 3. | |||||||
| phnS |
*
Cupriavidus taiwanensis Site: position = -175 score = 5.22113 sequence = ATTGTCAACAAT Gene: RALTA_B1651: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Ralstonia eutropha H16 Site: position = -192 score = 5.22113 sequence = ATTGTCAACAAT Gene: H16_B1950: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Ralstonia eutropha JMP134 Site: position = -139 score = 4.98385 sequence = ATTGTCAACAGT Gene: Reut_B5874: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
|
|
|
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
| phnT |
Gene: RALTA_B1652: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: H16_B1951: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Reut_B5873: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
|
|
|
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
| phnUV |
Gene: RALTA_B1653: A2-aminoethylphosphonate ABC transporter, permease protein (TC 3.A.1.9.1) |
Gene: H16_B1952: A2-aminoethylphosphonate ABC transporter, permease protein (TC 3.A.1.9.1) |
Gene: Reut_B5872: A2-aminoethylphosphonate ABC transporter, permease protein (TC 3.A.1.9.1) |
|
|
|
A2-aminoethylphosphonate ABC transporter, permease protein (TC 3.A.1.9.1) |
| phnW |
Gene: RALTA_B1654: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
Gene: H16_B1953: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
*2
Ralstonia eutropha JMP134 Site: position = -273 score = 5.22113 sequence = ATTGTCAACAAT Gene: Reut_B3718: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) Gene: Reut_B5871: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
|
|
|
2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |