Regulog PhnR2 - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | 2-aminoethylphosphonate utilization |
| Effector: | 2-aminoethylphosphonate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - PhnR
- By TF family - GntR/Others
- By effector - 2-aminoethylphosphonate
- By pathway - 2-aminoethylphosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 5 | 3 |
| Burkholderia glumae BGR1 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia phymatum STM815 | 9 | 2 |
| Burkholderia pseudomallei K96243 | ||
| Burkholderia sp. 383 | 8 | 3 |
| Burkholderia vietnamiensis G4 | ||
| Burkholderia xenovorans LB400 | 9 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| phnS2 |
Gene: Bamb_4661: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
Gene: bglu_2g03900: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
Gene: BMAA0855: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Burkholderia phymatum STM815 Site: position = -125 score = 4.35965 sequence = GTTGTCGGCAAT Gene: Bphy_5065: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
Gene: BPSS0344: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
Gene: Bcep18194_B0348: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
Gene: Bcep1808_3548: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Burkholderia xenovorans LB400 Site: position = -145 score = 4.35965 sequence = GTTGTTGGCAAT Gene: Bxe_B1875: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
| phnT2 |
Gene: Bamb_4660: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: bglu_2g03910: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: BMAA0856: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Bphy_5066: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: BPSS0345: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Bcep18194_B0349: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Bcep1808_3547: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Bxe_B1874: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
| phnU2 |
Gene: Bamb_4659: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: bglu_2g03920: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: BMAA0857: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: Bphy_5067: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: BPSS0346: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: Bcep18194_B0350: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: Bcep1808_3546: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: Bxe_B1873: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
| phnV |
Gene: Bamb_4658: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: bglu_2g03930: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: BMAA0858: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: Bphy_5068: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: BPSS0347: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: Bcep18194_B0351: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: Bcep1808_3545: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: Bxe_B1872: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
| phnR2 |
*
Burkholderia cepacia AMMD Site: position = -93 score = 4.98385 sequence = ACTGTTGACAAT Gene: Bamb_3197: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
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Gene: Bphy_5069: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
*
Burkholderia sp. 383 Site: position = -93 score = 4.98385 sequence = ACTGTTGACAAT Gene: Bcep18194_A6499: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
Gene: Bxe_B1871: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
| phnA2 |
Gene: Bamb_4657: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: bglu_2g03940: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: BMAA0859: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: Bphy_5070: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: BPSS0348: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: Bcep18194_B0352: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: Bcep1808_3544: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Gene: Bxe_B1870: Phosphonoacetate hydrolase (EC 3.11.1.2) |
Phosphonoacetate hydrolase (EC 3.11.1.2) |
| gap |
Gene: Bamb_4656: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
|
Gene: BMAA0860: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
Gene: Bphy_5071: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
Gene: BPSS0349: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
Gene: Bcep18194_B0353: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
Gene: Bcep1808_3543: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
Gene: Bxe_B1869: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase |
| COG4341 |
Gene: Bamb_4655: HD phosphohydrolase-like protein |
Gene: bglu_2g03950: HD phosphohydrolase-like protein |
Gene: BMAA0861: HD phosphohydrolase-like protein |
Gene: Bphy_5072: HD phosphohydrolase-like protein |
Gene: BPSS0350: HD phosphohydrolase-like protein |
Gene: Bcep18194_B0354: HD phosphohydrolase-like protein |
Gene: Bcep1808_3542: HD phosphohydrolase-like protein |
Gene: Bxe_B1868: HD phosphohydrolase-like protein |
HD phosphohydrolase-like protein |
| CRON 2. | |||||||||
| Bcep18194_A6494 |
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*
Burkholderia sp. 383 Site: position = -107 score = 4.86078 sequence = ATTGTCAACAAC Gene: Bcep18194_A6494: 2-aminoethylphosphonate ABC transporter, periplasmic component |
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2-aminoethylphosphonate ABC transporter, periplasmic component |
| Bcep18194_A6495 |
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Gene: Bcep18194_A6495: 2-aminoethylphosphonate ABC transporter, ATP-binding protein |
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2-aminoethylphosphonate ABC transporter, ATP-binding protein |
| Bcep18194_A6496 |
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Gene: Bcep18194_A6496: 2-aminoethylphosphonate ABC transporter, permease component |
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2-aminoethylphosphonate ABC transporter, permease component |
| Bamb_3195 |
*
Burkholderia cepacia AMMD Site: position = -66 score = 5.22113 sequence = ATTGTCAACAAT Gene: Bamb_3195: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
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Gene: Bcep18194_A6497: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
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2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
| Bamb_3196 |
Gene: Bamb_3196: FAD dependent oxidoreductase |
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Gene: Bcep18194_A6498: FAD dependent oxidoreductase |
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FAD dependent oxidoreductase |
| CRON 3. | |||||||||
| phnA |
*
Burkholderia cepacia AMMD Site: position = -114 score = 5.22113 sequence = ATTGTTGACAAT Gene: Bamb_3194: Phosphonoacetate hydrolase (EC 3.11.1.2) |
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*
Burkholderia sp. 383 Site: position = -113 score = 4.86078 sequence = GTTGTTGACAAT Gene: Bcep18194_A6493: Phosphonoacetate hydrolase (EC 3.11.1.2) |
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Phosphonoacetate hydrolase (EC 3.11.1.2) |
| Bamb_3193 |
Gene: Bamb_3193: NAD-dependent aldehyde dehydrogenases |
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Gene: Bcep18194_A6492: NAD-dependent aldehyde dehydrogenases |
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NAD-dependent aldehyde dehydrogenases |
| CRON 4. | |||||||||
| Bphy_5064 |
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*
Burkholderia phymatum STM815 Site: position = -231 score = 4.35965 sequence = ATTGCCGACAAC Gene: Bphy_5064: 2-aminoethylphosphonate--pyruvate transaminase |
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*
Burkholderia xenovorans LB400 Site: position = -213 score = 4.35965 sequence = ATTGCCAACAAC Gene: Bxe_B1876: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) |
2-aminoethylphosphonate--pyruvate transaminase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |