Regulog PhnR2 - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	2-aminoethylphosphonate utilization
Effector:	2-aminoethylphosphonate
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By trascription factor - PhnR
By TF family - GntR/Others
By effector - 2-aminoethylphosphonate
By pathway - 2-aminoethylphosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	5	3
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815	9	2
Burkholderia pseudomallei K96243
Burkholderia sp. 383	8	3
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400	9	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
phnS2	Burkholderia cepacia AMMD Gene: Bamb_4661: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Burkholderia glumae BGR1 Gene: bglu_2g03900: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344 Gene: BMAA0855: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	* Burkholderia phymatum STM815 Site: position = -125 score = 4.35965 sequence = GTTGTCGGCAAT Gene: Bphy_5065: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Burkholderia pseudomallei K96243 Gene: BPSS0344: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Burkholderia sp. 383 Gene: Bcep18194_B0348: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3548: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	* Burkholderia xenovorans LB400 Site: position = -145 score = 4.35965 sequence = GTTGTTGGCAAT Gene: Bxe_B1875: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
phnT2	Burkholderia cepacia AMMD Gene: Bamb_4660: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia glumae BGR1 Gene: bglu_2g03910: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344 Gene: BMAA0856: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia phymatum STM815 Gene: Bphy_5066: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia pseudomallei K96243 Gene: BPSS0345: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia sp. 383 Gene: Bcep18194_B0349: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3547: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Burkholderia xenovorans LB400 Gene: Bxe_B1874: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
phnU2	Burkholderia cepacia AMMD Gene: Bamb_4659: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia glumae BGR1 Gene: bglu_2g03920: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344 Gene: BMAA0857: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia phymatum STM815 Gene: Bphy_5067: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia pseudomallei K96243 Gene: BPSS0346: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia sp. 383 Gene: Bcep18194_B0350: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3546: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Burkholderia xenovorans LB400 Gene: Bxe_B1873: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
phnV	Burkholderia cepacia AMMD Gene: Bamb_4658: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia glumae BGR1 Gene: bglu_2g03930: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344 Gene: BMAA0858: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia phymatum STM815 Gene: Bphy_5068: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia pseudomallei K96243 Gene: BPSS0347: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia sp. 383 Gene: Bcep18194_B0351: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3545: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Burkholderia xenovorans LB400 Gene: Bxe_B1872: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
phnR2	* Burkholderia cepacia AMMD Site: position = -93 score = 4.98385 sequence = ACTGTTGACAAT Gene: Bamb_3197: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_5069: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -93 score = 4.98385 sequence = ACTGTTGACAAT Gene: Bcep18194_A6499: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400 Gene: Bxe_B1871: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	2-aminoethylphosphonate uptake and metabolism regulator, GntR family
phnA2	Burkholderia cepacia AMMD Gene: Bamb_4657: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia glumae BGR1 Gene: bglu_2g03940: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia mallei ATCC 23344 Gene: BMAA0859: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia phymatum STM815 Gene: Bphy_5070: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia pseudomallei K96243 Gene: BPSS0348: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia sp. 383 Gene: Bcep18194_B0352: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3544: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia xenovorans LB400 Gene: Bxe_B1870: Phosphonoacetate hydrolase (EC 3.11.1.2)	Phosphonoacetate hydrolase (EC 3.11.1.2)
gap	Burkholderia cepacia AMMD Gene: Bamb_4656: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344 Gene: BMAA0860: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia phymatum STM815 Gene: Bphy_5071: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia pseudomallei K96243 Gene: BPSS0349: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia sp. 383 Gene: Bcep18194_B0353: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia vietnamiensis G4 Gene: Bcep1808_3543: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	Burkholderia xenovorans LB400 Gene: Bxe_B1869: putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase	putative NADP-dependentglyceraldehyde-3- phosphate dehydrogenase
COG4341	Burkholderia cepacia AMMD Gene: Bamb_4655: HD phosphohydrolase-like protein	Burkholderia glumae BGR1 Gene: bglu_2g03950: HD phosphohydrolase-like protein	Burkholderia mallei ATCC 23344 Gene: BMAA0861: HD phosphohydrolase-like protein	Burkholderia phymatum STM815 Gene: Bphy_5072: HD phosphohydrolase-like protein	Burkholderia pseudomallei K96243 Gene: BPSS0350: HD phosphohydrolase-like protein	Burkholderia sp. 383 Gene: Bcep18194_B0354: HD phosphohydrolase-like protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_3542: HD phosphohydrolase-like protein	Burkholderia xenovorans LB400 Gene: Bxe_B1868: HD phosphohydrolase-like protein	HD phosphohydrolase-like protein

CRON 2.
Bcep18194_A6494	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -107 score = 4.86078 sequence = ATTGTCAACAAC Gene: Bcep18194_A6494: 2-aminoethylphosphonate ABC transporter, periplasmic component	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	2-aminoethylphosphonate ABC transporter, periplasmic component
Bcep18194_A6495	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A6495: 2-aminoethylphosphonate ABC transporter, ATP-binding protein	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	2-aminoethylphosphonate ABC transporter, ATP-binding protein
Bcep18194_A6496	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A6496: 2-aminoethylphosphonate ABC transporter, permease component	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	2-aminoethylphosphonate ABC transporter, permease component
Bamb_3195	* Burkholderia cepacia AMMD Site: position = -66 score = 5.22113 sequence = ATTGTCAACAAT Gene: Bamb_3195: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A6497: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
Bamb_3196	Burkholderia cepacia AMMD Gene: Bamb_3196: FAD dependent oxidoreductase	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A6498: FAD dependent oxidoreductase	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	FAD dependent oxidoreductase

CRON 3.
phnA	* Burkholderia cepacia AMMD Site: position = -114 score = 5.22113 sequence = ATTGTTGACAAT Gene: Bamb_3194: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -113 score = 4.86078 sequence = GTTGTTGACAAT Gene: Bcep18194_A6493: Phosphonoacetate hydrolase (EC 3.11.1.2)	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Phosphonoacetate hydrolase (EC 3.11.1.2)
Bamb_3193	Burkholderia cepacia AMMD Gene: Bamb_3193: NAD-dependent aldehyde dehydrogenases	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_A6492: NAD-dependent aldehyde dehydrogenases	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	NAD-dependent aldehyde dehydrogenases

CRON 4.
Bphy_5064	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -231 score = 4.35965 sequence = ATTGCCGACAAC Gene: Bphy_5064: 2-aminoethylphosphonate--pyruvate transaminase	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	* Burkholderia xenovorans LB400 Site: position = -213 score = 4.35965 sequence = ATTGCCAACAAC Gene: Bxe_B1876: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	2-aminoethylphosphonate--pyruvate transaminase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnR2 - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --