Regulog PSPTO1352 - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp	3	1
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000	10	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PSPTO1361	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -26 score = 5.07969 sequence = TCTTGTATACATGA Gene: PSPTO1361: Amidase family protein	Amidase family protein
PSPTO1360	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1360: Bmp family protein	Bmp family protein
PSPTO1359	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1359: ABC transporter, permease protein	ABC transporter, permease protein
PSPTO1358	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1358: ABC transporter, permease protein	ABC transporter, permease protein
amiE	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1357: Formamidase amiF (EC 3.5.1.49)	Formamidase amiF (EC 3.5.1.49)
PSPTO1356	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1356: Isochorismatase (EC 3.3.2.1)	Isochorismatase (EC 3.3.2.1)
PSPTO1355	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1355: ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein
PSPTO1354	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1354: Isochorismatase (EC 3.3.2.1)	Isochorismatase (EC 3.3.2.1)
PSPTO1353	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1353: no significant database hits	no significant database hits
PSPTO1352	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0702: Transcriptional regulator, GntR family	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1352: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
Pmen_0704	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -13 score = 5.0895 sequence = ACTTGGATACAAGA Gene: Pmen_0704: Allophanate hydrolase (EC 3.5.1.54)	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Allophanate hydrolase (EC 3.5.1.54)
Pmen_0703	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0703: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PSPTO1352 - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --