Regulog PSPTO1352 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 3 | 1 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 10 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PSPTO1361 |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -26 score = 5.07969 sequence = TCTTGTATACATGA Gene: PSPTO1361: Amidase family protein |
Amidase family protein |
| PSPTO1360 |
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Gene: PSPTO1360: Bmp family protein |
Bmp family protein |
| PSPTO1359 |
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Gene: PSPTO1359: ABC transporter, permease protein |
ABC transporter, permease protein |
| PSPTO1358 |
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Gene: PSPTO1358: ABC transporter, permease protein |
ABC transporter, permease protein |
| amiE |
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Gene: PSPTO1357: Formamidase amiF (EC 3.5.1.49) |
Formamidase amiF (EC 3.5.1.49) |
| PSPTO1356 |
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Gene: PSPTO1356: Isochorismatase (EC 3.3.2.1) |
Isochorismatase (EC 3.3.2.1) |
| PSPTO1355 |
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Gene: PSPTO1355: ABC transporter, ATP-binding protein |
ABC transporter, ATP-binding protein |
| PSPTO1354 |
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Gene: PSPTO1354: Isochorismatase (EC 3.3.2.1) |
Isochorismatase (EC 3.3.2.1) |
| PSPTO1353 |
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Gene: PSPTO1353: no significant database hits |
no significant database hits |
| PSPTO1352 |
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Gene: Pmen_0702: Transcriptional regulator, GntR family |
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Gene: PSPTO1352: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| Pmen_0704 |
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Pseudomonas mendocina ymp Site: position = -13 score = 5.0895 sequence = ACTTGGATACAAGA Gene: Pmen_0704: Allophanate hydrolase (EC 3.5.1.54) |
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Allophanate hydrolase (EC 3.5.1.54) |
| Pmen_0703 |
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Gene: Pmen_0703: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
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Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |