Regulog Atu2740 - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Sugar utilization |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/Others
- By pathway - Sugar utilization
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | 9 | 3 |
| Azorhizobium caulinodans ORS 571 | ||
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | ||
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium sp. NGR234 | ||
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | 9 | 3 |
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| Atu2739 |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -112 score = 4.91856 sequence = GTTGTCTGATAAC Gene: Atu2739: putative D-2-hydroxyglutarate dehydrogenase |
|
|
|
|
|
|
|
|
|
|
|
|
*
Sinorhizobium meliloti 1021 Site: position = -124 score = 4.91856 sequence = GTTGTCTGATAAC Gene: SMa0244: putative D-2-hydroxyglutarate dehydrogenase |
|
putative D-2-hydroxyglutarate dehydrogenase |
| Atu2740 |
Gene: Atu2740: Transcriptional regulator, GntR family |
|
|
|
|
|
|
|
|
|
|
|
|
Gene: SMa0246: Transcriptional regulator, GntR family |
|
Transcriptional regulator, GntR family |
| CRON 2. | ||||||||||||||||
| Atu2738 |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -94 score = 4.91856 sequence = GTTATCAGACAAC Gene: Atu2738: Nucleoside-diphosphate-sugar epimerases |
|
|
|
|
|
|
|
|
|
|
|
|
*
Sinorhizobium meliloti 1021 Site: position = -83 score = 4.91856 sequence = GTTATCAGACAAC Gene: SMa0241: Nucleoside-diphosphate-sugar epimerases |
|
Nucleoside-diphosphate-sugar epimerases |
| Atu2737 |
Gene: Atu2737: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|
|
|
|
|
|
|
|
|
Gene: RL3773: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|
|
Gene: SMa0237: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
| Atu2736 |
Gene: Atu2736: Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|
|
|
|
|
|
Gene: Meso_4493: Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|
Gene: RHE_CH03347: Dihydroxyacid dehydratase/phosphogluconate dehydratase |
Gene: RL3772: Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|
|
Gene: SMa0235: Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|
Dihydroxyacid dehydratase/phosphogluconate dehydratase |
| CRON 3. | ||||||||||||||||
| Atu2741 |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -66 score = 5.58226 sequence = GTTGTCAGACATC Gene: Atu2741: Fumarylacetoacetate (FAA) hydrolase family protein |
|
|
|
|
|
|
|
|
|
|
|
|
*
Sinorhizobium meliloti 1021 Site: position = -48 score = 5.58226 sequence = GTTGTCAGACATC Gene: SMa0247: Fumarylacetoacetate (FAA) hydrolase family protein |
|
Fumarylacetoacetate (FAA) hydrolase family protein |
| Atu2742 |
Gene: Atu2742: TRAP-type C4-dicarboxylate transport system, small permease component |
|
|
|
|
|
|
|
|
|
|
|
|
Gene: SMa0249: TRAP-type C4-dicarboxylate transport system, small permease component |
|
TRAP-type C4-dicarboxylate transport system, small permease component |
| Atu2743 |
Gene: Atu2743: TRAP-type C4-dicarboxylate transport system, large permease component |
|
|
|
|
|
|
|
|
|
|
|
|
Gene: SMa0250: TRAP-type C4-dicarboxylate transport system, large permease component |
|
TRAP-type C4-dicarboxylate transport system, large permease component |
| Atu2744 |
Gene: Atu2744: TRAP-type C4-dicarboxylate transport system, periplasmic component |
|
|
|
|
|
|
|
|
|
|
|
|
Gene: SMa0252: TRAP-type C4-dicarboxylate transport system, periplasmic component |
|
TRAP-type C4-dicarboxylate transport system, periplasmic component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |