Regulog PdxW - Mycobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Mycobacterium abscessus ATCC 19977
Mycobacterium avium 104	2	2
Mycobacterium flavescens PYR-GCK
Mycobacterium leprae TN
Mycobacterium marinum M	2	2
Mycobacterium smegmatis str. MC2 155
Mycobacterium sp. JLS
Mycobacterium tuberculosis H37Rv
Mycobacterium vanbaalenii PYR-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
pdxO	Mycobacterium abscessus ATCC 19977	* Mycobacterium avium 104 Site: position = -21 score = 5.49419 sequence = TATGTACTAGGACAAA Gene: MAV_3215: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	* Mycobacterium marinum M Site: position = -32 score = 5.60912 sequence = TATGTACTAGTACATA Gene: MMAR_2375: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

CRON 2.
pdxW	Mycobacterium abscessus ATCC 19977	* Mycobacterium avium 104 Site: position = -25 score = 5.49419 sequence = TTTGTCCTAGTACATA Gene: MAV_3214: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family	Mycobacterium flavescens PYR-GCK	Mycobacterium leprae TN	* Mycobacterium marinum M Site: position = -25 score = 5.60912 sequence = TATGTACTAGTACATA Gene: MMAR_2376: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1	Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --