Regulog UraR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/Others
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 9 | 4 |
| Ralstonia eutropha H16 | 10 | 5 |
| Ralstonia eutropha JMP134 | 6 | 3 |
| Ralstonia metallidurans CH34 | 6 | 3 |
| Ralstonia pickettii 12J | 6 | 2 |
| Ralstonia solanacearum GMI1000 | 6 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| atzB |
*
Cupriavidus taiwanensis Site: position = -117 score = 3.98948 sequence = TTTGTGGACAGT Gene: RALTA_A1283: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
*
Ralstonia eutropha H16 Site: position = -106 score = 3.42356 sequence = TTTGTGGACAGG Gene: H16_A1363: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
*
Ralstonia eutropha JMP134 Site: position = -1 score = 3.42356 sequence = TTTGTGGACATC Gene: Reut_A1294: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
*
Ralstonia metallidurans CH34 Site: position = -77 score = 3.42356 sequence = TTTGTGGACACC Gene: Rmet_1186: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
Gene: Rpic_2259: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
Gene: RSc2119: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) |
| CRON 2. | |||||||
| allC |
|
*
Ralstonia eutropha H16 Site: position = -27 score = 4.00884 sequence = ATTGCGGACAAT Gene: H16_B2460: Allantoicase (EC 3.5.3.4) |
|
|
|
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Allantoicase (EC 3.5.3.4) |
| CRON 3. | |||||||
| uraR |
*
Cupriavidus taiwanensis Site: position = -108 score = 5.1813 sequence = TTTGTTGACAAT Site: position = -76 score = 5.20066 sequence = ATTGTCAACAAT Gene: RALTA_A0992: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Ralstonia eutropha H16 Site: position = -75 score = 5.20066 sequence = ATTGTCAACAAT Site: position = -107 score = 5.1813 sequence = TTTGTTGACAAT Gene: H16_A1008: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Ralstonia eutropha JMP134 Site: position = -114 score = 5.20066 sequence = ATTGTCAACAAT Site: position = -146 score = 5.1813 sequence = TTTGTTGACAAT Gene: Reut_A2435: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Ralstonia metallidurans CH34 Site: position = -152 score = 5.1813 sequence = TTTGTTGACAAT Site: position = -120 score = 5.20066 sequence = ATTGTCAACAAT Gene: Rmet_0884: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Ralstonia pickettii 12J Site: position = -93 score = 5.1813 sequence = TTTGTTGACAAT Site: position = -61 score = 3.95595 sequence = ATTGTCAACAGG Gene: Rpic_2257: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Ralstonia solanacearum GMI1000 Site: position = -93 score = 5.1813 sequence = TTTGTTGACAAT Site: position = -61 score = 3.95595 sequence = ATTGTCAACAGG Gene: RS01487: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
Predicted transcriptional regulator for pyrimidine utilization, GntR family |
| pbuT |
Gene: RALTA_A0991: Xanthine/uracil permease |
Gene: H16_A1007: Xanthine/uracil permease |
Gene: Reut_A2436: Xanthine/uracil permease |
Gene: Rmet_0883: Xanthine/uracil permease |
Gene: Rpic_2258: Xanthine/uracil permease |
Gene: RS01486: Xanthine/uracil permease |
Xanthine/uracil permease |
| atzB |
|
|
|
|
Gene: Rpic_2259: Guanine deaminase (EC 3.5.4.3) |
Gene: RSc2119: Guanine deaminase (EC 3.5.4.3) |
Guanine deaminase (EC 3.5.4.3) |
| COG0726 |
2
Cupriavidus taiwanensis Gene: RALTA_B2203: putative polysaccharide deacetylase family protein Gene: RALTA_A0990: putative polysaccharide deacetylase family protein |
2
Ralstonia eutropha H16 Gene: H16_B2483: putative polysaccharide deacetylase family protein Gene: H16_A1006: putative polysaccharide deacetylase family protein |
Gene: Reut_A2437: putative polysaccharide deacetylase family protein |
Gene: Rmet_0882: putative polysaccharide deacetylase family protein |
Gene: Rpic_2260: putative polysaccharide deacetylase family protein |
Gene: RS01484: putative polysaccharide deacetylase family protein |
putative polysaccharide deacetylase family protein |
| uraO |
Gene: RALTA_A0989: Urate oxidase (EC 1.7.3.3) |
Gene: H16_A1005: Urate oxidase (EC 1.7.3.3) |
Gene: Reut_A2438: Urate oxidase (EC 1.7.3.3) |
Gene: Rmet_0881: Urate oxidase (EC 1.7.3.3) |
Gene: Rpic_2261: Urate oxidase (EC 1.7.3.3) |
Gene: RS01483: Urate oxidase (EC 1.7.3.3) |
Urate oxidase (EC 1.7.3.3) |
| COG1953 |
*
Cupriavidus taiwanensis Site: position = -112 score = 4.66827 sequence = TTTGTAGACAAT Site: position = -167 score = 4.52187 sequence = AATGTTGACAAT Gene: RALTA_B2201: Putative cytosine/uracil/thiamine/allantoin permeases |
*
Ralstonia eutropha H16 Site: position = -70 score = 4.66827 sequence = TTTGTAGACAAT Site: position = -125 score = 4.52187 sequence = AATGTTGACAAT Gene: H16_B2481: Putative cytosine/uracil/thiamine/allantoin permeases |
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|
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Putative cytosine/uracil/thiamine/allantoin permeases |
| hyuE |
Gene: RALTA_B2202: Hydantoin racemase (EC 5.1.99.-) |
Gene: H16_B2482: Hydantoin racemase (EC 5.1.99.-) |
|
|
|
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Hydantoin racemase (EC 5.1.99.-) |
| CRON 4. | |||||||
| pucM |
*
Cupriavidus taiwanensis Site: position = -202 score = 5.1813 sequence = ATTGTCAACAAA Site: position = -234 score = 5.20066 sequence = ATTGTTGACAAT Gene: RALTA_A0993: 5-hydroxyisourate hydrolase (HIUHase) |
*
Ralstonia eutropha H16 Site: position = -234 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -202 score = 5.1813 sequence = ATTGTCAACAAA Gene: H16_A1009: 5-hydroxyisourate hydrolase (HIUHase) |
*
Ralstonia eutropha JMP134 Site: position = -204 score = 5.1813 sequence = ATTGTCAACAAA Site: position = -236 score = 5.20066 sequence = ATTGTTGACAAT Gene: Reut_A2434: 5-hydroxyisourate hydrolase (HIUHase) |
*
Ralstonia metallidurans CH34 Site: position = -203 score = 5.1813 sequence = ATTGTCAACAAA Site: position = -235 score = 5.20066 sequence = ATTGTTGACAAT Gene: Rmet_0885: 5-hydroxyisourate hydrolase (HIUHase) |
*
Ralstonia pickettii 12J Site: position = -296 score = 5.1813 sequence = ATTGTCAACAAA Site: position = -328 score = 3.95595 sequence = CCTGTTGACAAT Gene: Rpic_2256: 5-hydroxyisourate hydrolase (HIUHase) |
*
Ralstonia solanacearum GMI1000 Site: position = -317 score = 3.95595 sequence = CCTGTTGACAAT Site: position = -285 score = 5.1813 sequence = ATTGTCAACAAA Gene: RS01488: 5-hydroxyisourate hydrolase (HIUHase) |
5-hydroxyisourate hydrolase (HIUHase) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |