Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog UraR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Pyrimidine utilization
Effector: Uracil
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 33 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 9 4
Ralstonia eutropha H16 10 5
Ralstonia eutropha JMP134 6 3
Ralstonia metallidurans CH34 6 3
Ralstonia pickettii 12J 6 2
Ralstonia solanacearum GMI1000 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
atzB
*
Cupriavidus taiwanensis

Site:
position = -117
score = 3.98948
sequence = TTTGTGGACAGT

Gene: RALTA_A1283: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
*
Ralstonia eutropha H16

Site:
position = -106
score = 3.42356
sequence = TTTGTGGACAGG

Gene: H16_A1363: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
*
Ralstonia eutropha JMP134

Site:
position = -1
score = 3.42356
sequence = TTTGTGGACATC

Gene: Reut_A1294: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
*
Ralstonia metallidurans CH34

Site:
position = -77
score = 3.42356
sequence = TTTGTGGACACC

Gene: Rmet_1186: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
 
Ralstonia pickettii 12J

Gene: Rpic_2259: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
 
Ralstonia solanacearum GMI1000

Gene: RSc2119: Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
 
CRON 2.
allC
 
Cupriavidus taiwanensis
*
Ralstonia eutropha H16

Site:
position = -27
score = 4.00884
sequence = ATTGCGGACAAT

Gene: H16_B2460: Allantoicase (EC 3.5.3.4)
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Allantoicase (EC 3.5.3.4)
 
CRON 3.
uraR
*
Cupriavidus taiwanensis

Site:
position = -108
score = 5.1813
sequence = TTTGTTGACAAT

Site:
position = -76
score = 5.20066
sequence = ATTGTCAACAAT

Gene: RALTA_A0992: Predicted transcriptional regulator for pyrimidine utilization, GntR family
*
Ralstonia eutropha H16

Site:
position = -75
score = 5.20066
sequence = ATTGTCAACAAT

Site:
position = -107
score = 5.1813
sequence = TTTGTTGACAAT

Gene: H16_A1008: Predicted transcriptional regulator for pyrimidine utilization, GntR family
*
Ralstonia eutropha JMP134

Site:
position = -114
score = 5.20066
sequence = ATTGTCAACAAT

Site:
position = -146
score = 5.1813
sequence = TTTGTTGACAAT

Gene: Reut_A2435: Predicted transcriptional regulator for pyrimidine utilization, GntR family
*
Ralstonia metallidurans CH34

Site:
position = -152
score = 5.1813
sequence = TTTGTTGACAAT

Site:
position = -120
score = 5.20066
sequence = ATTGTCAACAAT

Gene: Rmet_0884: Predicted transcriptional regulator for pyrimidine utilization, GntR family
*
Ralstonia pickettii 12J

Site:
position = -93
score = 5.1813
sequence = TTTGTTGACAAT

Site:
position = -61
score = 3.95595
sequence = ATTGTCAACAGG

Gene: Rpic_2257: Predicted transcriptional regulator for pyrimidine utilization, GntR family
*
Ralstonia solanacearum GMI1000

Site:
position = -93
score = 5.1813
sequence = TTTGTTGACAAT

Site:
position = -61
score = 3.95595
sequence = ATTGTCAACAGG

Gene: RS01487: Predicted transcriptional regulator for pyrimidine utilization, GntR family
Predicted transcriptional regulator for pyrimidine utilization, GntR family
pbuT
 
Cupriavidus taiwanensis

Gene: RALTA_A0991: Xanthine/uracil permease
 
Ralstonia eutropha H16

Gene: H16_A1007: Xanthine/uracil permease
 
Ralstonia eutropha JMP134

Gene: Reut_A2436: Xanthine/uracil permease
 
Ralstonia metallidurans CH34

Gene: Rmet_0883: Xanthine/uracil permease
 
Ralstonia pickettii 12J

Gene: Rpic_2258: Xanthine/uracil permease
 
Ralstonia solanacearum GMI1000

Gene: RS01486: Xanthine/uracil permease
Xanthine/uracil permease
atzB
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_2259: Guanine deaminase (EC 3.5.4.3)
 
Ralstonia solanacearum GMI1000

Gene: RSc2119: Guanine deaminase (EC 3.5.4.3)
Guanine deaminase (EC 3.5.4.3)
COG0726
 2
Cupriavidus taiwanensis

Gene: RALTA_B2203: putative polysaccharide deacetylase family protein

Gene: RALTA_A0990: putative polysaccharide deacetylase family protein
 2
Ralstonia eutropha H16

Gene: H16_B2483: putative polysaccharide deacetylase family protein

Gene: H16_A1006: putative polysaccharide deacetylase family protein
 
Ralstonia eutropha JMP134

Gene: Reut_A2437: putative polysaccharide deacetylase family protein
 
Ralstonia metallidurans CH34

Gene: Rmet_0882: putative polysaccharide deacetylase family protein
 
Ralstonia pickettii 12J

Gene: Rpic_2260: putative polysaccharide deacetylase family protein
 
Ralstonia solanacearum GMI1000

Gene: RS01484: putative polysaccharide deacetylase family protein
putative polysaccharide deacetylase family protein
uraO
 
Cupriavidus taiwanensis

Gene: RALTA_A0989: Urate oxidase (EC 1.7.3.3)
 
Ralstonia eutropha H16

Gene: H16_A1005: Urate oxidase (EC 1.7.3.3)
 
Ralstonia eutropha JMP134

Gene: Reut_A2438: Urate oxidase (EC 1.7.3.3)
 
Ralstonia metallidurans CH34

Gene: Rmet_0881: Urate oxidase (EC 1.7.3.3)
 
Ralstonia pickettii 12J

Gene: Rpic_2261: Urate oxidase (EC 1.7.3.3)
 
Ralstonia solanacearum GMI1000

Gene: RS01483: Urate oxidase (EC 1.7.3.3)
Urate oxidase (EC 1.7.3.3)
COG1953
*
Cupriavidus taiwanensis

Site:
position = -112
score = 4.66827
sequence = TTTGTAGACAAT

Site:
position = -167
score = 4.52187
sequence = AATGTTGACAAT

Gene: RALTA_B2201: Putative cytosine/uracil/thiamine/allantoin permeases
*
Ralstonia eutropha H16

Site:
position = -70
score = 4.66827
sequence = TTTGTAGACAAT

Site:
position = -125
score = 4.52187
sequence = AATGTTGACAAT

Gene: H16_B2481: Putative cytosine/uracil/thiamine/allantoin permeases
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Putative cytosine/uracil/thiamine/allantoin permeases
hyuE
 
Cupriavidus taiwanensis

Gene: RALTA_B2202: Hydantoin racemase (EC 5.1.99.-)
 
Ralstonia eutropha H16

Gene: H16_B2482: Hydantoin racemase (EC 5.1.99.-)
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Hydantoin racemase (EC 5.1.99.-)
 
CRON 4.
pucM
*
Cupriavidus taiwanensis

Site:
position = -202
score = 5.1813
sequence = ATTGTCAACAAA

Site:
position = -234
score = 5.20066
sequence = ATTGTTGACAAT

Gene: RALTA_A0993: 5-hydroxyisourate hydrolase (HIUHase)
*
Ralstonia eutropha H16

Site:
position = -234
score = 5.20066
sequence = ATTGTTGACAAT

Site:
position = -202
score = 5.1813
sequence = ATTGTCAACAAA

Gene: H16_A1009: 5-hydroxyisourate hydrolase (HIUHase)
*
Ralstonia eutropha JMP134

Site:
position = -204
score = 5.1813
sequence = ATTGTCAACAAA

Site:
position = -236
score = 5.20066
sequence = ATTGTTGACAAT

Gene: Reut_A2434: 5-hydroxyisourate hydrolase (HIUHase)
*
Ralstonia metallidurans CH34

Site:
position = -203
score = 5.1813
sequence = ATTGTCAACAAA

Site:
position = -235
score = 5.20066
sequence = ATTGTTGACAAT

Gene: Rmet_0885: 5-hydroxyisourate hydrolase (HIUHase)
*
Ralstonia pickettii 12J

Site:
position = -296
score = 5.1813
sequence = ATTGTCAACAAA

Site:
position = -328
score = 3.95595
sequence = CCTGTTGACAAT

Gene: Rpic_2256: 5-hydroxyisourate hydrolase (HIUHase)
*
Ralstonia solanacearum GMI1000

Site:
position = -317
score = 3.95595
sequence = CCTGTTGACAAT

Site:
position = -285
score = 5.1813
sequence = ATTGTCAACAAA

Gene: RS01488: 5-hydroxyisourate hydrolase (HIUHase)
5-hydroxyisourate hydrolase (HIUHase)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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