Regulog UraR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 7 | 1 |
| Burkholderia glumae BGR1 | 7 | 1 |
| Burkholderia mallei ATCC 23344 | 7 | 1 |
| Burkholderia phymatum STM815 | 7 | 1 |
| Burkholderia pseudomallei K96243 | 7 | 1 |
| Burkholderia sp. 383 | 7 | 1 |
| Burkholderia vietnamiensis G4 | 7 | 1 |
| Burkholderia xenovorans LB400 | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| uraR |
*
Burkholderia cepacia AMMD Site: position = -47 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -190 score = 5.16194 sequence = TTTGTCAACAAA Gene: Bamb_1954: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia glumae BGR1 Site: position = -189 score = 5.1813 sequence = ATTGTTGACAAA Site: position = -47 score = 5.20066 sequence = ATTGTTGACAAT Gene: bglu_1g13090: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia mallei ATCC 23344 Site: position = -56 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -199 score = 5.25986 sequence = ATTGTCGACAAA Gene: BMA1511: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia phymatum STM815 Site: position = -56 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -198 score = 5.2405 sequence = TTTGTCGACAAA Gene: Bphy_1303: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia pseudomallei K96243 Site: position = -47 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -190 score = 5.25986 sequence = ATTGTCGACAAA Gene: BPSL2121: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia sp. 383 Site: position = -190 score = 5.16194 sequence = TTTGTCAACAAA Site: position = -47 score = 5.20066 sequence = ATTGTTGACAAT Gene: Bcep18194_A5281: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia vietnamiensis G4 Site: position = -190 score = 5.2405 sequence = TTTGTCGACAAA Site: position = -47 score = 5.20066 sequence = ATTGTTGACAAT Gene: Bcep1808_1891: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
*
Burkholderia xenovorans LB400 Site: position = -56 score = 5.20066 sequence = ATTGTTGACAAT Site: position = -210 score = 5.16194 sequence = TTTGTTGACAAA Gene: Bxe_A1922: Predicted transcriptional regulator for pyrimidine utilization, GntR family |
Predicted transcriptional regulator for pyrimidine utilization, GntR family |
| pbuT |
Gene: Bamb_1953: Xanthine/uracil permease |
Gene: bglu_1g13100: Xanthine/uracil permease |
Gene: BMA1510: Xanthine/uracil permease |
Gene: Bphy_1302: Xanthine/uracil permease |
Gene: BPSL2120: Xanthine/uracil permease |
Gene: Bcep18194_A5280: Xanthine/uracil permease |
Gene: Bcep1808_1890: Xanthine/uracil permease |
Gene: Bxe_A1924: Xanthine/uracil permease |
Xanthine/uracil permease |
| hyuE |
Gene: Bamb_1952: Hydantoin racemase (EC 5.1.99.-) |
Gene: bglu_1g13110: Hydantoin racemase (EC 5.1.99.-) |
Gene: BMA1509: Hydantoin racemase (EC 5.1.99.-) |
Gene: Bphy_1301: Hydantoin racemase (EC 5.1.99.-) |
Gene: BPSL2119: Hydantoin racemase (EC 5.1.99.-) |
Gene: Bcep18194_A5279: Hydantoin racemase (EC 5.1.99.-) |
Gene: Bcep1808_1889: Hydantoin racemase (EC 5.1.99.-) |
Gene: Bxe_A1925: Hydantoin racemase (EC 5.1.99.-) |
Hydantoin racemase (EC 5.1.99.-) |
| COG0726 |
Gene: Bamb_1951: putative polysaccharide deacetylase family protein |
Gene: bglu_1g13120: putative polysaccharide deacetylase family protein |
Gene: BMA1508: putative polysaccharide deacetylase family protein |
Gene: Bphy_1300: putative polysaccharide deacetylase family protein |
Gene: BPSL2118: putative polysaccharide deacetylase family protein |
Gene: Bcep18194_A5278: putative polysaccharide deacetylase family protein |
Gene: Bcep1808_1888: putative polysaccharide deacetylase family protein |
Gene: Bxe_A1926: putative polysaccharide deacetylase family protein |
putative polysaccharide deacetylase family protein |
| uraO |
Gene: Bamb_1950: Urate oxidase (EC 1.7.3.3) |
Gene: bglu_1g13130: Urate oxidase (EC 1.7.3.3) |
Gene: BMA1507: Urate oxidase (EC 1.7.3.3) |
Gene: Bphy_1299: Urate oxidase (EC 1.7.3.3) |
Gene: BPSL2117: Urate oxidase (EC 1.7.3.3) |
Gene: Bcep18194_A5277: Urate oxidase (EC 1.7.3.3) |
Gene: Bcep1808_1887: Urate oxidase (EC 1.7.3.3) |
Gene: Bxe_A1927: Urate oxidase (EC 1.7.3.3) |
Urate oxidase (EC 1.7.3.3) |
| allC |
Gene: Bamb_1949: Allantoicase (EC 3.5.3.4) |
Gene: bglu_1g13140: Allantoicase (EC 3.5.3.4) |
Gene: BMA1505: Allantoicase (EC 3.5.3.4) |
Gene: Bphy_1298: Allantoicase (EC 3.5.3.4) |
Gene: BPSL2116: Allantoicase (EC 3.5.3.4) |
Gene: Bcep18194_A5276: Allantoicase (EC 3.5.3.4) |
Gene: Bcep1808_1886: Allantoicase (EC 3.5.3.4) |
Gene: Bxe_A1928: Allantoicase (EC 3.5.3.4) |
Allantoicase (EC 3.5.3.4) |
| allA |
Gene: Bamb_1948: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: bglu_1g13150: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: BMA1504: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bphy_1297: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: BPSL2115: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bcep18194_A5275: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bcep1808_1885: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bxe_A1929: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Ureidoglycolate hydrolase (EC 3.5.3.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |