Regulog UreR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | ||
| Ralstonia eutropha H16 | 10 | 5 |
| Ralstonia eutropha JMP134 | ||
| Ralstonia metallidurans CH34 | ||
| Ralstonia pickettii 12J | 5 | 1 |
| Ralstonia solanacearum GMI1000 | 5 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| h16_B2466 |
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Ralstonia eutropha H16 Site: position = -61 score = 5.73127 sequence = ACTGGTCATACCAGT Site: position = -52 score = 4.45923 sequence = ACCAGTATGACCAGA Gene: H16_B2466: ABC-type transporter, periplasmic component: PepT family |
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ABC-type transporter, periplasmic component: PepT family |
| h16_B2465 |
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Gene: H16_B2465: ABC-type transporter, permease component: PepT family |
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ABC-type transporter, permease component: PepT family |
| h16_B2464 |
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Gene: H16_B2464: ABC-type transporter, permease component: PepT family |
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ABC-type transporter, permease component: PepT family |
| h16_B2463 |
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Gene: H16_B2463: ABC-type transporter, duplicated ATPase domains:PepT family |
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ABC-type transporter, duplicated ATPase domains:PepT family |
| h16_B2462 |
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Gene: H16_B2462: Putative MFS transporter |
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Putative MFS transporter |
| CRON 2. | |||||||
| ureH |
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Ralstonia eutropha H16 Site: position = -119 score = 3.93347 sequence = ACTGGTCTGATAATT Site: position = -57 score = 5.90588 sequence = ACTGGTCAGACCAGT Gene: H16_B2455: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Ureidoglycolate hydrolase (EC 3.5.3.19) |
| dctA |
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Gene: H16_B2454: C4-dicarboxylate transporter |
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C4-dicarboxylate transporter |
| CRON 3. | |||||||
| ureR |
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Ralstonia eutropha H16 Site: position = -119 score = 3.93347 sequence = AATTATCAGACCAGT Site: position = -181 score = 5.90588 sequence = ACTGGTCTGACCAGT Gene: H16_B2456: Transcriptional regulator, GntR family |
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Ralstonia pickettii 12J Site: position = -41 score = 4.93652 sequence = ACCGGTCAGACCACG Gene: Rpic_0016: Transcriptional regulator, GntR family |
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Ralstonia solanacearum GMI1000 Site: position = -41 score = 4.93652 sequence = ACCGGTCAGACCACG Gene: RS01502: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| ureA |
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Gene: Rpic_0017: amino acid ABC transporter, periplasmic substrate-binding protein |
Gene: RS01501: amino acid ABC transporter, periplasmic substrate-binding protein |
amino acid ABC transporter, periplasmic substrate-binding protein |
| ureB |
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Gene: Rpic_0018: Amino acid ABC transporter, permease protein |
Gene: RS01500: Amino acid ABC transporter, permease protein |
Amino acid ABC transporter, permease protein |
| ureC |
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Gene: Rpic_0019: Amino acid ABC transporter, permease protein |
Gene: RS01499: Amino acid ABC transporter, permease protein |
Amino acid ABC transporter, permease protein |
| ureD |
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Gene: Rpic_0020: Amino acid ABC transporter, ATP-binding protein |
Gene: RS01498: Amino acid ABC transporter, ATP-binding protein |
Amino acid ABC transporter, ATP-binding protein |
| CRON 4. | |||||||
| aimE |
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*
Ralstonia eutropha H16 Site: position = -71 score = 5.73127 sequence = ACTGGTCATACCAGT Gene: H16_B2459: aliphatic amidase |
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aliphatic amidase |
| CRON 5. | |||||||
| h16_B2458 |
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Ralstonia eutropha H16 Site: position = -41 score = 5.73127 sequence = ACTGGTATGACCAGT Gene: H16_B2458: outer membrane protein (porin) |
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outer membrane protein (porin) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |