Regulog UreR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 4 | 2 |
| Burkholderia glumae BGR1 | 4 | 2 |
| Burkholderia mallei ATCC 23344 | 3 | 2 |
| Burkholderia phymatum STM815 | 4 | 2 |
| Burkholderia pseudomallei K96243 | 4 | 2 |
| Burkholderia sp. 383 | 4 | 2 |
| Burkholderia vietnamiensis G4 | 4 | 2 |
| Burkholderia xenovorans LB400 | 4 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ureR |
*
Burkholderia cepacia AMMD Site: position = -204 score = 5.73127 sequence = ACTGGTAAGACCAGT Site: position = -29 score = 4.87891 sequence = GCCGGTCAGACCGGC Gene: Bamb_0540: Transcriptional regulator, GntR family |
*
Burkholderia glumae BGR1 Site: position = -161 score = 5.73127 sequence = ACTGGTCATACCAGT Site: position = -25 score = 4.55331 sequence = GCCGGTCTGACCGCC Gene: bglu_1g05370: Transcriptional regulator, GntR family |
*
Burkholderia mallei ATCC 23344 Site: position = -30 score = 4.42304 sequence = GCCGGTCAGACCGCG Site: position = -203 score = 5.65421 sequence = ACTGGTCCGACCAGT Gene: BMA2462: Transcriptional regulator, GntR family |
*
Burkholderia phymatum STM815 Site: position = -34 score = 4.97201 sequence = ACTGGTCAGACCGCA Site: position = -195 score = 5.6743 sequence = ACCGGTCTGACCAGT Site: position = -112 score = 5.11048 sequence = GCTGGTCTGACCGGC Gene: Bphy_2597: Transcriptional regulator, GntR family |
*
Burkholderia pseudomallei K96243 Site: position = -203 score = 5.90588 sequence = ACTGGTCAGACCAGT Site: position = -30 score = 4.42304 sequence = GCCGGTCAGACCGCG Gene: BPSL2947: Transcriptional regulator, GntR family |
*
Burkholderia sp. 383 Site: position = -201 score = 5.73127 sequence = ACTGGTAAGACCAGT Site: position = -28 score = 4.87891 sequence = GCCGGTCAGACCGGC Gene: Bcep18194_A3731: Transcriptional regulator, GntR family |
*
Burkholderia vietnamiensis G4 Site: position = -117 score = 5.73127 sequence = ACTGGTATGACCAGT Site: position = 56 score = 4.87891 sequence = GCCGGTCAGACCGGC Gene: Bcep1808_0613: Transcriptional regulator, GntR family |
*
Burkholderia xenovorans LB400 Site: position = -33 score = 4.69009 sequence = GCTGGTCAGACCGCA Site: position = -194 score = 5.65421 sequence = ACTGGTCCGACCAGT Gene: Bxe_A0567: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 2. | |||||||||
| dctA |
*
Burkholderia cepacia AMMD Site: position = -56 score = 5.73127 sequence = ACTGGTCTTACCAGT Site: position = -231 score = 4.87891 sequence = GCCGGTCTGACCGGC Gene: Bamb_0541: C4-dicarboxylate transport protein |
*
Burkholderia glumae BGR1 Site: position = -69 score = 5.73127 sequence = ACTGGTATGACCAGT Site: position = -205 score = 4.55331 sequence = GGCGGTCAGACCGGC Gene: bglu_1g05380: C4-dicarboxylate transport protein |
*
Burkholderia mallei ATCC 23344 Site: position = -57 score = 5.65421 sequence = ACTGGTCGGACCAGT Site: position = -230 score = 4.42304 sequence = CGCGGTCTGACCGGC Gene: BMA2461: C4-dicarboxylate transport protein |
*
Burkholderia phymatum STM815 Site: position = -232 score = 4.97201 sequence = TGCGGTCTGACCAGT Site: position = -154 score = 5.11048 sequence = GCCGGTCAGACCAGC Site: position = -71 score = 5.6743 sequence = ACTGGTCAGACCGGT Gene: Bphy_2596: C4-dicarboxylate transport protein |
*
Burkholderia pseudomallei K96243 Site: position = -230 score = 4.42304 sequence = CGCGGTCTGACCGGC Site: position = -57 score = 5.90588 sequence = ACTGGTCTGACCAGT Gene: BPSL2946: C4-dicarboxylate transport protein |
*
Burkholderia sp. 383 Site: position = -229 score = 4.87891 sequence = GCCGGTCTGACCGGC Site: position = -56 score = 5.73127 sequence = ACTGGTCTTACCAGT Gene: Bcep18194_A3732: C4-dicarboxylate transport protein |
*
Burkholderia vietnamiensis G4 Site: position = -56 score = 5.73127 sequence = ACTGGTCATACCAGT Site: position = -229 score = 4.87891 sequence = GCCGGTCTGACCGGC Gene: Bcep1808_0614: C4-dicarboxylate transport protein |
*
Burkholderia xenovorans LB400 Site: position = -210 score = 4.69009 sequence = TGCGGTCTGACCAGC Site: position = -49 score = 5.65421 sequence = ACTGGTCGGACCAGT Gene: Bxe_A0568: C4-dicarboxylate transport protein |
C4-dicarboxylate transport protein |
| allH |
Gene: Bamb_0542: Allantoicase (EC 3.5.3.4) |
Gene: bglu_1g05390: Allantoicase (EC 3.5.3.4) |
Gene: BMA2460: Allantoicase (EC 3.5.3.4) |
Gene: Bphy_2595: Allantoicase (EC 3.5.3.4) |
Gene: BPSL2945: Allantoicase (EC 3.5.3.4) |
Gene: Bcep18194_A3733: Allantoicase (EC 3.5.3.4) |
Gene: Bcep1808_0615: Allantoicase (EC 3.5.3.4) |
Gene: Bxe_A0569: Allantoicase (EC 3.5.3.4) |
Allantoicase (EC 3.5.3.4) |
| ureH |
Gene: Bamb_0543: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: bglu_1g05400: Ureidoglycolate hydrolase (EC 3.5.3.19) |
|
Gene: Bphy_2594: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: BPSL2944: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bcep18194_A3734: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bcep1808_0616: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Bxe_A0570: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Ureidoglycolate hydrolase (EC 3.5.3.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |