Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog UreR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 34 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 4 2
Burkholderia glumae BGR1 4 2
Burkholderia mallei ATCC 23344 3 2
Burkholderia phymatum STM815 4 2
Burkholderia pseudomallei K96243 4 2
Burkholderia sp. 383 4 2
Burkholderia vietnamiensis G4 4 2
Burkholderia xenovorans LB400 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ureR
*
Burkholderia cepacia AMMD

Site:
position = -204
score = 5.73127
sequence = ACTGGTAAGACCAGT

Site:
position = -29
score = 4.87891
sequence = GCCGGTCAGACCGGC

Gene: Bamb_0540: Transcriptional regulator, GntR family
*
Burkholderia glumae BGR1

Site:
position = -161
score = 5.73127
sequence = ACTGGTCATACCAGT

Site:
position = -25
score = 4.55331
sequence = GCCGGTCTGACCGCC

Gene: bglu_1g05370: Transcriptional regulator, GntR family
*
Burkholderia mallei ATCC 23344

Site:
position = -30
score = 4.42304
sequence = GCCGGTCAGACCGCG

Site:
position = -203
score = 5.65421
sequence = ACTGGTCCGACCAGT

Gene: BMA2462: Transcriptional regulator, GntR family
*
Burkholderia phymatum STM815

Site:
position = -34
score = 4.97201
sequence = ACTGGTCAGACCGCA

Site:
position = -195
score = 5.6743
sequence = ACCGGTCTGACCAGT

Site:
position = -112
score = 5.11048
sequence = GCTGGTCTGACCGGC

Gene: Bphy_2597: Transcriptional regulator, GntR family
*
Burkholderia pseudomallei K96243

Site:
position = -203
score = 5.90588
sequence = ACTGGTCAGACCAGT

Site:
position = -30
score = 4.42304
sequence = GCCGGTCAGACCGCG

Gene: BPSL2947: Transcriptional regulator, GntR family
*
Burkholderia sp. 383

Site:
position = -201
score = 5.73127
sequence = ACTGGTAAGACCAGT

Site:
position = -28
score = 4.87891
sequence = GCCGGTCAGACCGGC

Gene: Bcep18194_A3731: Transcriptional regulator, GntR family
*
Burkholderia vietnamiensis G4

Site:
position = -117
score = 5.73127
sequence = ACTGGTATGACCAGT

Site:
position = 56
score = 4.87891
sequence = GCCGGTCAGACCGGC

Gene: Bcep1808_0613: Transcriptional regulator, GntR family
*
Burkholderia xenovorans LB400

Site:
position = -33
score = 4.69009
sequence = GCTGGTCAGACCGCA

Site:
position = -194
score = 5.65421
sequence = ACTGGTCCGACCAGT

Gene: Bxe_A0567: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
 
CRON 2.
dctA
*
Burkholderia cepacia AMMD

Site:
position = -56
score = 5.73127
sequence = ACTGGTCTTACCAGT

Site:
position = -231
score = 4.87891
sequence = GCCGGTCTGACCGGC

Gene: Bamb_0541: C4-dicarboxylate transport protein
*
Burkholderia glumae BGR1

Site:
position = -69
score = 5.73127
sequence = ACTGGTATGACCAGT

Site:
position = -205
score = 4.55331
sequence = GGCGGTCAGACCGGC

Gene: bglu_1g05380: C4-dicarboxylate transport protein
*
Burkholderia mallei ATCC 23344

Site:
position = -57
score = 5.65421
sequence = ACTGGTCGGACCAGT

Site:
position = -230
score = 4.42304
sequence = CGCGGTCTGACCGGC

Gene: BMA2461: C4-dicarboxylate transport protein
*
Burkholderia phymatum STM815

Site:
position = -232
score = 4.97201
sequence = TGCGGTCTGACCAGT

Site:
position = -154
score = 5.11048
sequence = GCCGGTCAGACCAGC

Site:
position = -71
score = 5.6743
sequence = ACTGGTCAGACCGGT

Gene: Bphy_2596: C4-dicarboxylate transport protein
*
Burkholderia pseudomallei K96243

Site:
position = -230
score = 4.42304
sequence = CGCGGTCTGACCGGC

Site:
position = -57
score = 5.90588
sequence = ACTGGTCTGACCAGT

Gene: BPSL2946: C4-dicarboxylate transport protein
*
Burkholderia sp. 383

Site:
position = -229
score = 4.87891
sequence = GCCGGTCTGACCGGC

Site:
position = -56
score = 5.73127
sequence = ACTGGTCTTACCAGT

Gene: Bcep18194_A3732: C4-dicarboxylate transport protein
*
Burkholderia vietnamiensis G4

Site:
position = -56
score = 5.73127
sequence = ACTGGTCATACCAGT

Site:
position = -229
score = 4.87891
sequence = GCCGGTCTGACCGGC

Gene: Bcep1808_0614: C4-dicarboxylate transport protein
*
Burkholderia xenovorans LB400

Site:
position = -210
score = 4.69009
sequence = TGCGGTCTGACCAGC

Site:
position = -49
score = 5.65421
sequence = ACTGGTCGGACCAGT

Gene: Bxe_A0568: C4-dicarboxylate transport protein
C4-dicarboxylate transport protein
allH
 
Burkholderia cepacia AMMD

Gene: Bamb_0542: Allantoicase (EC 3.5.3.4)
 
Burkholderia glumae BGR1

Gene: bglu_1g05390: Allantoicase (EC 3.5.3.4)
 
Burkholderia mallei ATCC 23344

Gene: BMA2460: Allantoicase (EC 3.5.3.4)
 
Burkholderia phymatum STM815

Gene: Bphy_2595: Allantoicase (EC 3.5.3.4)
 
Burkholderia pseudomallei K96243

Gene: BPSL2945: Allantoicase (EC 3.5.3.4)
 
Burkholderia sp. 383

Gene: Bcep18194_A3733: Allantoicase (EC 3.5.3.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0615: Allantoicase (EC 3.5.3.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0569: Allantoicase (EC 3.5.3.4)
Allantoicase (EC 3.5.3.4)
ureH
 
Burkholderia cepacia AMMD

Gene: Bamb_0543: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia glumae BGR1

Gene: bglu_1g05400: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_2594: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia pseudomallei K96243

Gene: BPSL2944: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia sp. 383

Gene: Bcep18194_A3734: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0616: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0570: Ureidoglycolate hydrolase (EC 3.5.3.19)
Ureidoglycolate hydrolase (EC 3.5.3.19)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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