Regulog UreR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 2 | 1 |
| Pseudomonas entomophila L48 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 2 | 1 |
| Pseudomonas mendocina ymp | 6 | 2 |
| Pseudomonas putida KT2440 | 2 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| dctA |
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Pseudomonas aeruginosa PAO1 Site: position = -74 score = 5.6743 sequence = ACTGGTCAGACCGGT Site: position = -65 score = 4.62278 sequence = ACCGGTAATACCACA Gene: PA0119: C4-dicarboxylate transport protein |
*
Pseudomonas entomophila L48 Site: position = -84 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -160 score = 5.6743 sequence = ACTGGTCAGACCGGT Site: position = -151 score = 3.98895 sequence = ACCGGTCAGTCCAAA Gene: PSEEN1849: C4-dicarboxylate transport protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -85 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -94 score = 4.83593 sequence = ACTGGACATACCGGT Site: position = -170 score = 5.6743 sequence = ACTGGTCAGACCGGT Gene: PFL_5347: C4-dicarboxylate transport protein |
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Pseudomonas putida KT2440 Site: position = -85 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -160 score = 5.6743 sequence = ACTGGTCAGACCGGT Gene: PP2255: C4-dicarboxylate transport protein |
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C4-dicarboxylate transport protein |
| ureR |
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Gene: PA0120: Transcriptional regulator, GntR family |
Gene: PSEEN1848: Transcriptional regulator, GntR family |
Gene: PFL_5348: Transcriptional regulator, GntR family |
*
Pseudomonas mendocina ymp Site: position = -164 score = 5.24212 sequence = ACTGGTCTGAACAGT Site: position = -25 score = 4.72863 sequence = ACTGGACTGACCGGC Site: position = -16 score = 4.09512 sequence = ACCGGCCCGAACAGT Gene: Pmen_0307: Transcriptional regulator, GntR family |
Gene: PP2254: Transcriptional regulator, GntR family |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -141 score = 5.90588 sequence = ACTGGTCTGACCAGT Site: position = -25 score = 4.06487 sequence = ACTGGACTGACTGGC Site: position = -16 score = 4.57836 sequence = ACTGGCCTGAACAGT Gene: PSPTO5244: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 2. | |||||||||
| ureA |
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*
Pseudomonas mendocina ymp Site: position = -277 score = 4.72863 sequence = GCCGGTCAGTCCAGT Site: position = -138 score = 5.24212 sequence = ACTGTTCAGACCAGT Site: position = -286 score = 4.09512 sequence = ACTGTTCGGGCCGGT Gene: Pmen_0306: Amino acid ABC transporter, periplasmic amino acid-binding protein |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -249 score = 4.57836 sequence = ACTGTTCAGGCCAGT Site: position = -240 score = 4.06487 sequence = GCCAGTCAGTCCAGT Site: position = -124 score = 5.90588 sequence = ACTGGTCAGACCAGT Gene: PSPTO5245: Amino acid ABC transporter, periplasmic amino acid-binding protein |
Amino acid ABC transporter, periplasmic amino acid-binding protein |
| ureB |
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Gene: Pmen_0305: Amino acid ABC transporter, permease protein |
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Gene: PSPTO5246: Amino acid ABC transporter, permease protein |
Amino acid ABC transporter, permease protein |
| ureC |
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Gene: Pmen_0304: Amino acid ABC transporter, permease protein |
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Gene: PSPTO5247: Amino acid ABC transporter, permease protein |
Amino acid ABC transporter, permease protein |
| ureD |
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Gene: Pmen_0303: Amino acid ABC transporter, ATP-binding protein |
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Gene: PSPTO5248: Amino acid ABC transporter, ATP-binding protein |
Amino acid ABC transporter, ATP-binding protein |
| ureH |
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Gene: Pmen_0302: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Ureidoglycolate hydrolase (EC 3.5.3.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |