Regulog UreR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1	2	1
Pseudomonas entomophila L48	2	1
Pseudomonas fluorescens Pf-5	2	1
Pseudomonas mendocina ymp	6	2
Pseudomonas putida KT2440	2	1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
dctA	Azotobacter vinelandii AvOP	* Pseudomonas aeruginosa PAO1 Site: position = -74 score = 5.6743 sequence = ACTGGTCAGACCGGT Site: position = -65 score = 4.62278 sequence = ACCGGTAATACCACA Gene: PA0119: C4-dicarboxylate transport protein	* Pseudomonas entomophila L48 Site: position = -84 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -160 score = 5.6743 sequence = ACTGGTCAGACCGGT Site: position = -151 score = 3.98895 sequence = ACCGGTCAGTCCAAA Gene: PSEEN1849: C4-dicarboxylate transport protein	* Pseudomonas fluorescens Pf-5 Site: position = -85 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -94 score = 4.83593 sequence = ACTGGACATACCGGT Site: position = -170 score = 5.6743 sequence = ACTGGTCAGACCGGT Gene: PFL_5347: C4-dicarboxylate transport protein	Pseudomonas mendocina ymp	* Pseudomonas putida KT2440 Site: position = -85 score = 4.79739 sequence = ACCGGTAAGACCACA Site: position = -160 score = 5.6743 sequence = ACTGGTCAGACCGGT Gene: PP2255: C4-dicarboxylate transport protein	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	C4-dicarboxylate transport protein
ureR	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1 Gene: PA0120: Transcriptional regulator, GntR family	Pseudomonas entomophila L48 Gene: PSEEN1848: Transcriptional regulator, GntR family	Pseudomonas fluorescens Pf-5 Gene: PFL_5348: Transcriptional regulator, GntR family	* Pseudomonas mendocina ymp Site: position = -164 score = 5.24212 sequence = ACTGGTCTGAACAGT Site: position = -25 score = 4.72863 sequence = ACTGGACTGACCGGC Site: position = -16 score = 4.09512 sequence = ACCGGCCCGAACAGT Gene: Pmen_0307: Transcriptional regulator, GntR family	Pseudomonas putida KT2440 Gene: PP2254: Transcriptional regulator, GntR family	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -141 score = 5.90588 sequence = ACTGGTCTGACCAGT Site: position = -25 score = 4.06487 sequence = ACTGGACTGACTGGC Site: position = -16 score = 4.57836 sequence = ACTGGCCTGAACAGT Gene: PSPTO5244: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

CRON 2.
ureA	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -277 score = 4.72863 sequence = GCCGGTCAGTCCAGT Site: position = -138 score = 5.24212 sequence = ACTGTTCAGACCAGT Site: position = -286 score = 4.09512 sequence = ACTGTTCGGGCCGGT Gene: Pmen_0306: Amino acid ABC transporter, periplasmic amino acid-binding protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -249 score = 4.57836 sequence = ACTGTTCAGGCCAGT Site: position = -240 score = 4.06487 sequence = GCCAGTCAGTCCAGT Site: position = -124 score = 5.90588 sequence = ACTGGTCAGACCAGT Gene: PSPTO5245: Amino acid ABC transporter, periplasmic amino acid-binding protein	Amino acid ABC transporter, periplasmic amino acid-binding protein
ureB	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0305: Amino acid ABC transporter, permease protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5246: Amino acid ABC transporter, permease protein	Amino acid ABC transporter, permease protein
ureC	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0304: Amino acid ABC transporter, permease protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5247: Amino acid ABC transporter, permease protein	Amino acid ABC transporter, permease protein
ureD	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0303: Amino acid ABC transporter, ATP-binding protein	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5248: Amino acid ABC transporter, ATP-binding protein	Amino acid ABC transporter, ATP-binding protein
ureH	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_0302: Ureidoglycolate hydrolase (EC 3.5.3.19)	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Ureidoglycolate hydrolase (EC 3.5.3.19)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UreR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --