Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TreR - Clostridia-3

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides pectinophilus ATCC 43243
Blautia hansenii DSM 20583
Bryantella formatexigens DSM 14469
Clostridiales bacterium 1_7_47_FAA 3 1
Clostridium bolteae ATCC BAA-613 2 1
Clostridium nexile DSM 1787
Clostridium scindens ATCC 35704
Dorea formicigenerans ATCC 27755
Dorea longicatena DSM 13814
Eubacterium eligens ATCC 27750
Eubacterium rectale ATCC 33656
Roseburia intestinalis L1-82
Ruminococcus gnavus ATCC 29149
Ruminococcus lactaris ATCC 29176
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
treP
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
*
Clostridiales bacterium 1_7_47_FAA

Site:
position = -78
score = 5.3334
sequence = AACTTGTTTAAACAAGAT

Site:
position = -113
score = 5.3334
sequence = AACTTGTTTAAACAAGAT

Gene: Cbac1_010100011695: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -89
score = 5.3334
sequence = AACTTGTTTAAACAAGAT

Site:
position = -54
score = 4.92611
sequence = TACTTGTTTAAACAAGAT

Gene: CLOBOL_05033: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Cbac1_010100011690
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100011690: hypothetical protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
hypothetical protein
treA
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100011685: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05034: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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