Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TreR - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795
Clostridium difficile 630 2 2
Clostridium hiranonis DSM 13275
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
treR
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -83
score = 4.28492
sequence = TACATGTCTAAACACATT

Site:
position = -59
score = 4.5485
sequence = AATTTGTTCATATCAGTT

Site:
position = -296
score = 4.4892
sequence = TATTTGTTTAAACAAATT

Gene: CD3090: Trehalose transcriptional repressor, GntR family
 
Clostridium hiranonis DSM 13275
Trehalose transcriptional repressor, GntR family
 
CRON 2.
treA
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -52
score = 4.49522
sequence = AATTTGTTTGAACATATT

Site:
position = -116
score = 4.23155
sequence = TATATGTTTATACAAATA

Gene: CD3091: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium hiranonis DSM 13275
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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