Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TreR - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052 2 1
Clostridium botulinum A str. ATCC 3502 3 1
Clostridium butyricum 5521
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124 2 2
Clostridium tetani E88
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
treP
 
Clostridium acetobutylicum ATCC 824
*
Clostridium beijerincki NCIMB 8052

Site:
position = -273
score = 4.30504
sequence = AATATGTTTAAACATATT

Site:
position = -197
score = 4.4892
sequence = AATTTGTTTAAACAAATA

Gene: Cbei_2320: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -106
score = 5.71733
sequence = AACATGTACGTACAAGAT

Site:
position = -73
score = 5.35841
sequence = CACTTGTACGTACATCTT

Gene: CBO1987: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -63
score = 4.81299
sequence = AACATATACGTATATGTT

Site:
position = -32
score = 5.27683
sequence = AAGATATACGTACAAGTT

Gene: CPF_0541: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
 
Clostridium tetani E88
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
treA
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_2321: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1988: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium butyricum 5521

Gene: CBY_3145: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -34
score = 5.89331
sequence = AACTTATACGTACAAGTT

Gene: CPF_0542: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Clostridium tetani E88
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
treR
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_2319: Trehalose transcriptional repressor, GntR family
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1989: Trehalose transcriptional repressor, GntR family
 
Clostridium butyricum 5521

Gene: CBY_3144: Trehalose transcriptional repressor, GntR family
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_0543: Trehalose transcriptional repressor, GntR family
 
Clostridium tetani E88
Trehalose transcriptional repressor, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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