Regulog TreR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Trehalose utilization |
| Effector: | Trehalose-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - GntR/Others
- By effector - Trehalose-6-phosphate
- By pathway - Trehalose utilization
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium beijerincki NCIMB 8052 | 2 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 3 | 1 |
| Clostridium butyricum 5521 | ||
| Clostridium kluyveri DSM 555 | ||
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | 2 | 2 |
| Clostridium tetani E88 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| treP |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -273 score = 4.30504 sequence = AATATGTTTAAACATATT Site: position = -197 score = 4.4892 sequence = AATTTGTTTAAACAAATA Gene: Cbei_2320: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -106 score = 5.71733 sequence = AACATGTACGTACAAGAT Site: position = -73 score = 5.35841 sequence = CACTTGTACGTACATCTT Gene: CBO1987: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
|
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -63 score = 4.81299 sequence = AACATATACGTATATGTT Site: position = -32 score = 5.27683 sequence = AAGATATACGTACAAGTT Gene: CPF_0541: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
|
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
| treA |
|
Gene: Cbei_2321: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
Gene: CBO1988: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
Gene: CBY_3145: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -34 score = 5.89331 sequence = AACTTATACGTACAAGTT Gene: CPF_0542: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
|
Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
| treR |
|
Gene: Cbei_2319: Trehalose transcriptional repressor, GntR family |
Gene: CBO1989: Trehalose transcriptional repressor, GntR family |
Gene: CBY_3144: Trehalose transcriptional repressor, GntR family |
|
|
Gene: CPF_0543: Trehalose transcriptional repressor, GntR family |
|
Trehalose transcriptional repressor, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |