Regulog HpxS - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Allantoin utilization
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - GntR/Others
By pathway - Allantoin utilization

Statistics of regulated genes
Genome	Genes	Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043	6	3
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1	3	1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Saccharophagus degradans 2-40
Marinobacter aqueolei
Marinobacter sp. ELB17	5	3
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
hpxS	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_0069: Transcriptional regulator for allantoin utilization, GntR family	Hahella chejuensis KCTC 2396	* Marinomonas sp. MWYL1 Site: position = -116 score = 4.22712 sequence = TATTGTGCACAATT Site: position = -29 score = 4.15775 sequence = CATCGTATACAATT Site: position = -252 score = 4.41863 sequence = AATTGTATACAATG Gene: Mmwyl1_0471: Transcriptional regulator for allantoin utilization, GntR family	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -51 score = 5.17527 sequence = TTTCGTATACAATA Gene: MELB17_16768: Transcriptional regulator for allantoin utilization, GntR family	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Transcriptional regulator for allantoin utilization, GntR family
hyuE	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -220 score = 4.84503 sequence = TGATGTATACAAAA Site: position = -71 score = 4.88391 sequence = TTTTGTATTCAATA Site: position = -50 score = 4.94602 sequence = TTTTGTAGACAAAA Gene: Csal_0077: Hydantoin racemase (EC 5.1.99.-)	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0470: Hydantoin racemase (EC 5.1.99.-)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Hydantoin racemase (EC 5.1.99.-)
hpxB	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -212 score = 4.88391 sequence = TATTGAATACAAAA Site: position = -63 score = 4.84503 sequence = TTTTGTATACATCA Site: position = -233 score = 4.94602 sequence = TTTTGTCTACAAAA Gene: Csal_0078: Allantoinase, urate catabolism protein	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1 Gene: Mmwyl1_0469: Allantoinase, urate catabolism protein	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -80 score = 4.99858 sequence = TATTGTGTACAAAA Site: position = -261 score = 4.15391 sequence = AATTGTACACGTTA Gene: MELB17_16758: Allantoinase, urate catabolism protein	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Allantoinase, urate catabolism protein
COG3257	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_0079: putative allantoin-urate catabolism protein	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_16753: putative allantoin-urate catabolism protein	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	putative allantoin-urate catabolism protein
COG3194	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_0080: Ureidoglycolate hydrolase (EC 3.5.3.19)	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_16748: Ureidoglycolate hydrolase (EC 3.5.3.19)	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Ureidoglycolate hydrolase (EC 3.5.3.19)
COG2351	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -92 score = 5.09493 sequence = TGTTGTATACAAAA Gene: Csal_0068: Transthyretin	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Saccharophagus degradans 2-40	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -107 score = 4.85237 sequence = AAATGTATACAATA Gene: MELB17_16778: Transthyretin	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Transthyretin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HpxS - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --