Regulog HpxS - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Allantoin utilization |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - GntR/Others
- By pathway - Allantoin utilization
| Genome | Genes | Operons |
|---|---|---|
| Alcanivorax borkumensis SK2 | ||
| Chromohalobacter salexigens DSM 3043 | 6 | 3 |
| Hahella chejuensis KCTC 2396 | ||
| Marinomonas sp. MWYL1 | 3 | 1 |
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Reinekea sp. MED297 | ||
| Saccharophagus degradans 2-40 | ||
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | 5 | 3 |
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| hpxS |
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Gene: Csal_0069: Transcriptional regulator for allantoin utilization, GntR family |
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Marinomonas sp. MWYL1 Site: position = -116 score = 4.22712 sequence = TATTGTGCACAATT Site: position = -29 score = 4.15775 sequence = CATCGTATACAATT Site: position = -252 score = 4.41863 sequence = AATTGTATACAATG Gene: Mmwyl1_0471: Transcriptional regulator for allantoin utilization, GntR family |
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Marinobacter sp. ELB17 Site: position = -51 score = 5.17527 sequence = TTTCGTATACAATA Gene: MELB17_16768: Transcriptional regulator for allantoin utilization, GntR family |
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Transcriptional regulator for allantoin utilization, GntR family |
| hyuE |
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Chromohalobacter salexigens DSM 3043 Site: position = -220 score = 4.84503 sequence = TGATGTATACAAAA Site: position = -71 score = 4.88391 sequence = TTTTGTATTCAATA Site: position = -50 score = 4.94602 sequence = TTTTGTAGACAAAA Gene: Csal_0077: Hydantoin racemase (EC 5.1.99.-) |
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Gene: Mmwyl1_0470: Hydantoin racemase (EC 5.1.99.-) |
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Hydantoin racemase (EC 5.1.99.-) |
| hpxB |
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Chromohalobacter salexigens DSM 3043 Site: position = -212 score = 4.88391 sequence = TATTGAATACAAAA Site: position = -63 score = 4.84503 sequence = TTTTGTATACATCA Site: position = -233 score = 4.94602 sequence = TTTTGTCTACAAAA Gene: Csal_0078: Allantoinase, urate catabolism protein |
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Gene: Mmwyl1_0469: Allantoinase, urate catabolism protein |
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Marinobacter sp. ELB17 Site: position = -80 score = 4.99858 sequence = TATTGTGTACAAAA Site: position = -261 score = 4.15391 sequence = AATTGTACACGTTA Gene: MELB17_16758: Allantoinase, urate catabolism protein |
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Allantoinase, urate catabolism protein |
| COG3257 |
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Gene: Csal_0079: putative allantoin-urate catabolism protein |
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Gene: MELB17_16753: putative allantoin-urate catabolism protein |
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putative allantoin-urate catabolism protein |
| COG3194 |
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Gene: Csal_0080: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Gene: MELB17_16748: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Ureidoglycolate hydrolase (EC 3.5.3.19) |
| COG2351 |
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Chromohalobacter salexigens DSM 3043 Site: position = -92 score = 5.09493 sequence = TGTTGTATACAAAA Gene: Csal_0068: Transthyretin |
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Marinobacter sp. ELB17 Site: position = -107 score = 4.85237 sequence = AAATGTATACAATA Gene: MELB17_16778: Transthyretin |
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Transthyretin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |