Regulog Atu3908 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	6	2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
COG1914	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -97 score = 4.60595 sequence = TATTGTTGAACAATA Gene: Atu3909: Mn2+ and Fe2+ transporters of the NRAMP family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Mn2+ and Fe2+ transporters of the NRAMP family
COG1540	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3910: Uncharacterized proteins, homologs of lactam utilization protein B	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19620: Uncharacterized proteins, homologs of lactam utilization protein B	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Uncharacterized proteins, homologs of lactam utilization protein B
COG4336	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3911: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
alhAB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3912: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19610: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
alhC	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3913: Urea carboxylase (EC 6.3.4.6)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b19600: Urea carboxylase (EC 6.3.4.6)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Urea carboxylase (EC 6.3.4.6)

CRON 2.
Atu3908	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -184 score = 4.60595 sequence = TATTGTTCAACAATA Gene: Atu3908: Transcriptional regulator, GntR family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Atu3908 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --