Regulog PSPTO5027 - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5	1	1
Pseudomonas mendocina ymp
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000	7	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
COG1914	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -107 score = 4.94196 sequence = AATTGTTCAACAATA Gene: PSPTO5377: Mn2+ and Fe2+ transporters of the NRAMP family	Mn2+ and Fe2+ transporters of the NRAMP family
COG1540	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5378: Uncharacterized proteins, homologs of lactam utilization protein B	Uncharacterized proteins, homologs of lactam utilization protein B
COG4336	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5379: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
alhAB	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5380: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
alhC	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5381: Urea carboxylase (EC 6.3.4.6)	Urea carboxylase (EC 6.3.4.6)

CRON 2.
PSPTO5028	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -311 score = 4.73934 sequence = GTTTGCTGAACAATC Gene: PSPTO5028: hypothetical protein	hypothetical protein

CRON 3.
PSPTO5027	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas fluorescens Pf-5 Site: position = -27 score = 5.54644 sequence = AATTGTTGAACAATC Gene: PFL_4301: Transcriptional regulator, GntR family	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	2 Pseudomonas syringae pv. tomato str. DC3000* Site: position = -163 score = 4.94196 sequence = TATTGTTGAACAATT Gene: PSPTO5376: Transcriptional regulator, GntR family Gene: PSPTO5027: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PSPTO5027 - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --