Regulog PSPTO5027 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | 1 | 1 |
| Pseudomonas mendocina ymp | ||
| Pseudomonas putida KT2440 | ||
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 7 | 3 |
| Genes | Function | ||||||||
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| CRON 1. | |||||||||
| COG1914 |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -107 score = 4.94196 sequence = AATTGTTCAACAATA Gene: PSPTO5377: Mn2+ and Fe2+ transporters of the NRAMP family |
Mn2+ and Fe2+ transporters of the NRAMP family |
| COG1540 |
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Gene: PSPTO5378: Uncharacterized proteins, homologs of lactam utilization protein B |
Uncharacterized proteins, homologs of lactam utilization protein B |
| COG4336 |
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Gene: PSPTO5379: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
| alhAB |
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Gene: PSPTO5380: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
| alhC |
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Gene: PSPTO5381: Urea carboxylase (EC 6.3.4.6) |
Urea carboxylase (EC 6.3.4.6) |
| CRON 2. | |||||||||
| PSPTO5028 |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -311 score = 4.73934 sequence = GTTTGCTGAACAATC Gene: PSPTO5028: hypothetical protein |
hypothetical protein |
| CRON 3. | |||||||||
| PSPTO5027 |
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Pseudomonas fluorescens Pf-5 Site: position = -27 score = 5.54644 sequence = AATTGTTGAACAATC Gene: PFL_4301: Transcriptional regulator, GntR family |
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*2
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -163 score = 4.94196 sequence = TATTGTTGAACAATT Gene: PSPTO5376: Transcriptional regulator, GntR family Gene: PSPTO5027: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |