Regulog Amir_6997 - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | 7 | 4 |
| Saccharomonospora viridis DSM 43017 | ||
| Saccharopolyspora erythraea NRRL 2338 | 6 | 2 |
| Acidothermus cellulolyticus 11B | ||
| Frankia sp. CcI3 | ||
| Frankia sp. EAN1pec | ||
| Nakamurella multipartita DSM 44233 | 4 | 2 |
| Nocardioides sp. JS614 | 1 | 1 |
| Propionibacterium acnes KPA171202 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| COG1914 |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -94 score = 5.54644 sequence = GATTGTTCAACAATT Gene: SACE_1549: Mn2+ and Fe2+ transporters of the NRAMP family |
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Mn2+ and Fe2+ transporters of the NRAMP family |
| COG1540 |
Gene: Amir_5927: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: Svir_09670: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: SACE_1550: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: Acel_0592: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: Francci3_2973: Uncharacterized proteins, homologs of lactam utilization protein B |
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Gene: Noca_2978: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: PPA0282: Uncharacterized proteins, homologs of lactam utilization protein B |
Uncharacterized proteins, homologs of lactam utilization protein B |
| alhA |
*
Actinosynnema mirum DSM 43827 Site: position = -58 score = 5.5337 sequence = GGTTGTTGAACAATC Gene: Amir_6832: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
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Gene: SACE_1551: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: Acel_0593: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: Francci3_2974: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
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Nakamurella multipartita DSM 44233 Site: position = -819 score = 5.54644 sequence = GATTGTTCAACAATT Gene: Namu_4801: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: Noca_2977: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: PPA0283: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
| alhB |
Gene: Amir_6834: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: Svir_06210: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: SACE_1552: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: Acel_0594: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: Francci3_2975: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
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Gene: Namu_4802: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
2
Nocardioides sp. JS614 Gene: Noca_2976: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) Gene: Noca_0092: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: PPA0284: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
| COG4336 |
Gene: Amir_5735: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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Gene: SACE_1553: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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Gene: Noca_0093: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
| Amir_6833 |
Gene: Amir_6833: hypothetical protein |
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hypothetical protein |
| COG2814 |
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Actinosynnema mirum DSM 43827 Site: position = -61 score = 5.8149 sequence = GATTGTTCAACAATC Gene: Amir_5734: Major facilitator superfamily transporter |
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Gene: Namu_4803: Major facilitator superfamily transporter |
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Major facilitator superfamily transporter |
| CRON 2. | ||||||||||
| Amir_6996 |
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Actinosynnema mirum DSM 43827 Site: position = -134 score = 5.5337 sequence = GATTGTTCAACAACC Gene: Amir_6996: putative secreted protein |
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Gene: SACE_3321: putative secreted protein |
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putative secreted protein |
| CRON 3. | ||||||||||
| Amir_6997 |
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Actinosynnema mirum DSM 43827 Site: position = -58 score = 5.5337 sequence = GGTTGTTGAACAATC Gene: Amir_6997: Transcriptional regulator, GntR family |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -81 score = 5.54644 sequence = AATTGTTGAACAATC Gene: SACE_1548: Transcriptional regulator, GntR family |
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Nakamurella multipartita DSM 44233 Site: position = -44 score = 5.54644 sequence = AATTGTTGAACAATC Gene: Namu_4799: Transcriptional regulator, GntR family |
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Nocardioides sp. JS614 Site: position = -16 score = 3.87254 sequence = GATCGTCGCGCAACT Gene: Noca_0048: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |