Regulog Amir_6997 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Actinosynnema mirum DSM 43827	7	4
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338	6	2
Acidothermus cellulolyticus 11B
Frankia sp. CcI3
Frankia sp. EAN1pec
Nakamurella multipartita DSM 44233	4	2
Nocardioides sp. JS614	1	1
Propionibacterium acnes KPA171202

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
COG1914	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	* Saccharopolyspora erythraea NRRL 2338 Site: position = -94 score = 5.54644 sequence = GATTGTTCAACAATT Gene: SACE_1549: Mn2+ and Fe2+ transporters of the NRAMP family	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Mn2+ and Fe2+ transporters of the NRAMP family
COG1540	Actinosynnema mirum DSM 43827 Gene: Amir_5927: Uncharacterized proteins, homologs of lactam utilization protein B	Saccharomonospora viridis DSM 43017 Gene: Svir_09670: Uncharacterized proteins, homologs of lactam utilization protein B	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_1550: Uncharacterized proteins, homologs of lactam utilization protein B	Acidothermus cellulolyticus 11B Gene: Acel_0592: Uncharacterized proteins, homologs of lactam utilization protein B	Frankia sp. CcI3 Gene: Francci3_2973: Uncharacterized proteins, homologs of lactam utilization protein B	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233	Nocardioides sp. JS614 Gene: Noca_2978: Uncharacterized proteins, homologs of lactam utilization protein B	Propionibacterium acnes KPA171202 Gene: PPA0282: Uncharacterized proteins, homologs of lactam utilization protein B	Uncharacterized proteins, homologs of lactam utilization protein B
alhA	* Actinosynnema mirum DSM 43827 Site: position = -58 score = 5.5337 sequence = GGTTGTTGAACAATC Gene: Amir_6832: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_1551: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Acidothermus cellulolyticus 11B Gene: Acel_0593: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Frankia sp. CcI3 Gene: Francci3_2974: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Frankia sp. EAN1pec	* Nakamurella multipartita DSM 44233 Site: position = -819 score = 5.54644 sequence = GATTGTTCAACAATT Gene: Namu_4801: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Nocardioides sp. JS614 Gene: Noca_2977: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Propionibacterium acnes KPA171202 Gene: PPA0283: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhB	Actinosynnema mirum DSM 43827 Gene: Amir_6834: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Saccharomonospora viridis DSM 43017 Gene: Svir_06210: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_1552: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Acidothermus cellulolyticus 11B Gene: Acel_0594: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Frankia sp. CcI3 Gene: Francci3_2975: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233 Gene: Namu_4802: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	2 Nocardioides sp. JS614 Gene: Noca_2976: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) Gene: Noca_0092: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Propionibacterium acnes KPA171202 Gene: PPA0284: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
COG4336	Actinosynnema mirum DSM 43827 Gene: Amir_5735: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_1553: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233	Nocardioides sp. JS614 Gene: Noca_0093: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Propionibacterium acnes KPA171202	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
Amir_6833	Actinosynnema mirum DSM 43827 Gene: Amir_6833: hypothetical protein	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	hypothetical protein
COG2814	* Actinosynnema mirum DSM 43827 Site: position = -61 score = 5.8149 sequence = GATTGTTCAACAATC Gene: Amir_5734: Major facilitator superfamily transporter	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233 Gene: Namu_4803: Major facilitator superfamily transporter	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Major facilitator superfamily transporter

CRON 2.
Amir_6996	* Actinosynnema mirum DSM 43827 Site: position = -134 score = 5.5337 sequence = GATTGTTCAACAACC Gene: Amir_6996: putative secreted protein	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_3321: putative secreted protein	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	Nakamurella multipartita DSM 44233	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	putative secreted protein

CRON 3.
Amir_6997	* Actinosynnema mirum DSM 43827 Site: position = -58 score = 5.5337 sequence = GGTTGTTGAACAATC Gene: Amir_6997: Transcriptional regulator, GntR family	Saccharomonospora viridis DSM 43017	* Saccharopolyspora erythraea NRRL 2338 Site: position = -81 score = 5.54644 sequence = AATTGTTGAACAATC Gene: SACE_1548: Transcriptional regulator, GntR family	Acidothermus cellulolyticus 11B	Frankia sp. CcI3	Frankia sp. EAN1pec	* Nakamurella multipartita DSM 44233 Site: position = -44 score = 5.54644 sequence = AATTGTTGAACAATC Gene: Namu_4799: Transcriptional regulator, GntR family	* Nocardioides sp. JS614 Site: position = -16 score = 3.87254 sequence = GATCGTCGCGCAACT Gene: Noca_0048: Transcriptional regulator, GntR family	Propionibacterium acnes KPA171202	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Amir_6997 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --