Regulog PhnF - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Phosphonate utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | ||
| Saccharomonospora viridis DSM 43017 | ||
| Saccharopolyspora erythraea NRRL 2338 | 10 | 2 |
| Acidothermus cellulolyticus 11B | ||
| Nakamurella multipartita DSM 44233 | ||
| Frankia sp. EAN1pec | ||
| Frankia sp. CcI3 | ||
| Nocardioides sp. JS614 | ||
| Propionibacterium acnes KPA171202 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| COG0665 |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -85 score = 4.14881 sequence = ACTGATCTAGACCGTC Gene: SACE_6647: Putative FAD dependent oxidoreductase |
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Putative FAD dependent oxidoreductase |
| phnX |
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Gene: SACE_6646: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
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Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
| phnD |
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Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
| phnC |
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Gene: SACE_6644: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
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Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
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Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
| phnE |
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Gene: SACE_6643: Phosphonate ABC transporter, permease protein |
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Gene: Francci3_2157: Phosphonate ABC transporter, permease protein |
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Phosphonate ABC transporter, permease protein |
| CRON 2. | ||||||||||
| SACE_6647 |
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*
Saccharopolyspora erythraea NRRL 2338 Site: position = -85 score = 4.14881 sequence = ACTGATCTAGACCGTC Gene: SACE_6647: hypothetical protein |
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hypothetical protein |
| SACE_6646 |
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Gene: SACE_6646: Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C |
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Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C |
| SACE_6645 |
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Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
| SACE_6644 |
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Gene: SACE_6644: Phosphonate ABC transporter PhnC, ATP-binding |
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Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
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Phosphonate ABC transporter PhnC, ATP-binding |
| SACE_6643 |
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Gene: SACE_6643: phosphonates ABC transporter, permease protein |
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Gene: Francci3_2157: Metal-dependent hydrolase involved in phosphonate metabolism |
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phosphonates ABC transporter, permease protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |