Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PhnF - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Phosphonate utilization
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Actinosynnema mirum DSM 43827
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338 10 2
Acidothermus cellulolyticus 11B
Nakamurella multipartita DSM 44233
Frankia sp. EAN1pec
Frankia sp. CcI3
Nocardioides sp. JS614
Propionibacterium acnes KPA171202
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0665
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -85
score = 4.14881
sequence = ACTGATCTAGACCGTC

Gene: SACE_6647: Putative FAD dependent oxidoreductase
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Putative FAD dependent oxidoreductase
phnX
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6646: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
phnD
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnC
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6644: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnE
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6643: Phosphonate ABC transporter, permease protein
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2157: Phosphonate ABC transporter, permease protein
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonate ABC transporter, permease protein
 
CRON 2.
SACE_6647
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -85
score = 4.14881
sequence = ACTGATCTAGACCGTC

Gene: SACE_6647: hypothetical protein
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
hypothetical protein
SACE_6646
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6646: Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C
SACE_6645
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
SACE_6644
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6644: Phosphonate ABC transporter PhnC, ATP-binding
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
Phosphonate ABC transporter PhnC, ATP-binding
SACE_6643
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_6643: phosphonates ABC transporter, permease protein
 
Acidothermus cellulolyticus 11B
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3

Gene: Francci3_2157: Metal-dependent hydrolase involved in phosphonate metabolism
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
phosphonates ABC transporter, permease protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD