Regulog PhnF - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Phosphonate utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Actinosynnema mirum DSM 43827
Saccharomonospora viridis DSM 43017
Saccharopolyspora erythraea NRRL 2338	10	2
Acidothermus cellulolyticus 11B
Nakamurella multipartita DSM 44233
Frankia sp. EAN1pec
Frankia sp. CcI3
Nocardioides sp. JS614
Propionibacterium acnes KPA171202

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
COG0665	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	* Saccharopolyspora erythraea NRRL 2338 Site: position = -85 score = 4.14881 sequence = ACTGATCTAGACCGTC Gene: SACE_6647: Putative FAD dependent oxidoreductase	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Putative FAD dependent oxidoreductase
phnX	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6646: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
phnD	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnC	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6644: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnE	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6643: Phosphonate ABC transporter, permease protein	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2157: Phosphonate ABC transporter, permease protein	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonate ABC transporter, permease protein

CRON 2.
SACE_6647	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	* Saccharopolyspora erythraea NRRL 2338 Site: position = -85 score = 4.14881 sequence = ACTGATCTAGACCGTC Gene: SACE_6647: hypothetical protein	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	hypothetical protein
SACE_6646	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6646: Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C
SACE_6645	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6645: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2155: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
SACE_6644	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6644: Phosphonate ABC transporter PhnC, ATP-binding	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2156: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	Phosphonate ABC transporter PhnC, ATP-binding
SACE_6643	Actinosynnema mirum DSM 43827	Saccharomonospora viridis DSM 43017	Saccharopolyspora erythraea NRRL 2338 Gene: SACE_6643: phosphonates ABC transporter, permease protein	Acidothermus cellulolyticus 11B	Nakamurella multipartita DSM 44233	Frankia sp. EAN1pec	Frankia sp. CcI3 Gene: Francci3_2157: Metal-dependent hydrolase involved in phosphonate metabolism	Nocardioides sp. JS614	Propionibacterium acnes KPA171202	phosphonates ABC transporter, permease protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Frankineae/Propionibacterineae/Pseudonocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --