Regulog IolR - Mycobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Inositol utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By TF family - GntR/Others
- By pathway - Inositol utilization
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium abscessus ATCC 19977 | ||
| Mycobacterium avium 104 | ||
| Mycobacterium flavescens PYR-GCK | 9 | 3 |
| Mycobacterium leprae TN | ||
| Mycobacterium marinum M | ||
| Mycobacterium smegmatis str. MC2 155 | 7 | 3 |
| Mycobacterium sp. JLS | ||
| Mycobacterium tuberculosis H37Rv | ||
| Mycobacterium vanbaalenii PYR-1 | 9 | 3 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| iolC |
|
|
*
Mycobacterium flavescens PYR-GCK Site: position = -88 score = 5.36767 sequence = AGAATGTCAGGACAAAGT Gene: Mflv_2602: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
|
|
*
Mycobacterium smegmatis str. MC2 155 Site: position = -105 score = 3.71282 sequence = ACAAAGTCTTGACAGACG Site: position = -116 score = 5.08361 sequence = AGAATGTCAGAACAAAGT Gene: MSMEG_4661: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
|
|
*
Mycobacterium vanbaalenii PYR-1 Site: position = -80 score = 3.77544 sequence = ACAAAGTCTTGACATGGC Site: position = -91 score = 5.36767 sequence = AGAATGTCAGGACAAAGT Gene: Mvan_4016: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
| iolJ |
|
|
Gene: Mflv_2601: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
|
|
Gene: MSMEG_4662: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
|
|
Gene: Mvan_4017: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
| iolB |
|
|
Gene: Mflv_2600: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
|
|
Gene: MSMEG_4663: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
|
|
Gene: Mvan_4018: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
| iolD |
|
|
Gene: Mflv_2599: Epi-inositol hydrolase (EC 3.7.1.-) |
|
|
Gene: MSMEG_4664: Epi-inositol hydrolase (EC 3.7.1.-) |
|
|
Gene: Mvan_4019: Epi-inositol hydrolase (EC 3.7.1.-) |
Epi-inositol hydrolase (EC 3.7.1.-) |
| iolG |
|
|
Gene: Mflv_2598: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
|
|
Gene: MSMEG_4666: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
|
|
2
Mycobacterium vanbaalenii PYR-1 Gene: Mvan_0387: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: Mvan_4020: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| CRON 2. | ||||||||||
| iolTA |
|
|
*
Mycobacterium flavescens PYR-GCK Site: position = -129 score = 5.28157 sequence = CTAATGTCAGGACAAACT Gene: Mflv_2605: Inositol ABC transport system sugar-binding protein |
|
|
*
Mycobacterium smegmatis str. MC2 155 Site: position = -122 score = 4.83628 sequence = CTAATGTCATAACAAAGT Gene: MSMEG_4658: Inositol ABC transport system sugar-binding protein |
|
|
*
Mycobacterium vanbaalenii PYR-1 Site: position = -130 score = 5.17908 sequence = CTAATGTCAGGACAAAGT Gene: Mvan_4011: Inositol ABC transport system sugar-binding protein |
Inositol ABC transport system sugar-binding protein |
| iolTB |
|
|
Gene: Mflv_2606: Inositol ABC transport system permease protein |
|
|
Gene: MSMEG_4657: Inositol ABC transport system permease protein |
|
|
Gene: Mvan_4010: Inositol ABC transport system permease protein |
Inositol ABC transport system permease protein |
| iolTC |
|
|
Gene: Mflv_2607: Inositol ABC transport system ATP-binding protein |
|
|
Gene: MSMEG_4656: Inositol ABC transport system ATP-binding protein |
|
|
Gene: Mvan_4009: Inositol ABC transport system ATP-binding protein |
Inositol ABC transport system ATP-binding protein |
| CRON 3. | ||||||||||
| iolR |
|
|
*
Mycobacterium flavescens PYR-GCK Site: position = -84 score = 5.36767 sequence = ACTTTGTCCTGACATTCT Gene: Mflv_2603: Inositol utilization transcriptional regulator, GntR family |
|
|
*
Mycobacterium smegmatis str. MC2 155 Site: position = -109 score = 3.71282 sequence = CGTCTGTCAAGACTTTGT Site: position = -98 score = 5.08361 sequence = ACTTTGTTCTGACATTCT Gene: MSMEG_4659: Inositol utilization transcriptional regulator, GntR family |
|
|
*
Mycobacterium vanbaalenii PYR-1 Site: position = -98 score = 3.77544 sequence = GCCATGTCAAGACTTTGT Site: position = -87 score = 5.36767 sequence = ACTTTGTCCTGACATTCT Gene: Mvan_4015: Inositol utilization transcriptional regulator, GntR family |
Inositol utilization transcriptional regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |