Regulog LldR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Lactate utilization |
| Effector: | L-lactate |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - GntR/Others
- By effector - L-lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardioides sp. JS614 | ||
| Propionibacterium acnes KPA171202 | 5 | 2 |
| Actinosynnema mirum DSM 43827 | 3 | 2 |
| Saccharomonospora viridis DSM 43017 | ||
| Saccharopolyspora erythraea NRRL 2338 | 4 | 2 |
| Nakamurella multipartita DSM 44233 | 12 | 5 |
| Frankia sp. EAN1pec | ||
| Frankia sp. CcI3 | ||
| Acidothermus cellulolyticus 11B |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| SACE_3508 |
|
*
Propionibacterium acnes KPA171202 Site: position = -272 score = 5.44288 sequence = TTTGGTCCGACCAAT Gene: PPA0165: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
*
Actinosynnema mirum DSM 43827 Site: position = 1 score = 5.85682 sequence = TGTGGTCGGACCACA Gene: Amir_3039: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
|
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -67 score = 5.82024 sequence = TATGGTCAGACCACA Gene: SACE_3508: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
*
Nakamurella multipartita DSM 44233 Site: position = -126 score = 5.9977 sequence = TTTGGTCTGACCAAA Gene: Namu_5224: GntR domain protein |
|
|
|
Lactate-responsive regulator LldR in Actinobacteria, GntR family |
| CRON 2. | ||||||||||
| lldD |
Gene: Noca_0280: L-lactate dehydrogenase (EC 1.1.2.3) |
|
|
|
2
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_5887: L-lactate dehydrogenase (EC 1.1.2.3) Gene: SACE_4311: L-lactate dehydrogenase (EC 1.1.2.3) |
*
Nakamurella multipartita DSM 44233 Site: position = -78 score = 4.97701 sequence = TGTGGCCTGACCACC Site: position = -63 score = 5.82024 sequence = TATGGTCAGACCACA Gene: Namu_5297: L-lactate dehydrogenase (EC 1.1.2.3) |
|
|
|
L-lactate dehydrogenase (EC 1.1.2.3) |
| CRON 3. | ||||||||||
| Noca_0644 |
Gene: Noca_0644: Putative transcriptional regulator, LysR family |
|
|
|
|
*2
Nakamurella multipartita DSM 44233 Site: position = -345 score = 5.49562 sequence = CTTGGTCAGACCACA Gene: Namu_3565: Putative transcriptional regulator, LysR family Site: position = -174 score = 5.30162 sequence = TTTGGTCTTACCATA Gene: Namu_1036: Putative transcriptional regulator, LysR family |
|
|
|
Putative transcriptional regulator, LysR family |
| lldP |
|
*
Propionibacterium acnes KPA171202 Site: position = -77 score = 5.44288 sequence = ATTGGTCGGACCAAA Gene: PPA0166: L-lactate permease |
|
|
|
*4
Nakamurella multipartita DSM 44233 Gene: Namu_3729: L-lactate permease Gene: Namu_3564: L-lactate permease Gene: Namu_1035: L-lactate permease Site: position = -53 score = 5.9977 sequence = TTTGGTCAGACCAAA Gene: Namu_5225: L-lactate permease |
|
|
|
L-lactate permease |
| lldE |
|
Gene: PPA0167: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
*
Actinosynnema mirum DSM 43827 Site: position = -24 score = 5.85682 sequence = TGTGGTCCGACCACA Gene: Amir_3038: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
Gene: Svir_37080: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -168 score = 5.82024 sequence = TGTGGTCTGACCATA Gene: SACE_3507: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
4
Nakamurella multipartita DSM 44233 Gene: Namu_3730: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE Gene: Namu_3563: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE Gene: Namu_5226: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE Gene: Namu_1034: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
|
|
|
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
| lldF |
|
Gene: PPA0168: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Amir_3037: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Svir_37070: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: SACE_3506: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
4
Nakamurella multipartita DSM 44233 Gene: Namu_3731: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF Gene: Namu_1033: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF Gene: Namu_3562: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF Gene: Namu_5227: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
|
|
|
L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
| lldG |
|
Gene: PPA0169: L-lactate dehydrogenase, subunit LldG |
Gene: Amir_3036: L-lactate dehydrogenase, subunit LldG |
Gene: Svir_37060: L-lactate dehydrogenase, subunit LldG |
Gene: SACE_3505: L-lactate dehydrogenase, subunit LldG |
4
Nakamurella multipartita DSM 44233 Gene: Namu_5228: L-lactate dehydrogenase, subunit LldG Gene: Namu_1032: L-lactate dehydrogenase, subunit LldG Gene: Namu_3561: L-lactate dehydrogenase, subunit LldG Gene: Namu_3732: L-lactate dehydrogenase, subunit LldG |
|
|
|
L-lactate dehydrogenase, subunit LldG |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |